Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8003069.1 | LIPASE MATURATION FACTOR |
| CAI8003075.1 | LIPASE MATURATION FACTOR |
| CAI8003067.1 | JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE |
| CAI8003077.1 | |
| CAI8003094.1 | |
| CAI8003096.1 | |
| CAI8003098.1 | N6-ADENOSINE-METHYLTRANSFERASE |
| CAI8003102.1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL |
| CAI8003104.1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL |
| CAI8003100.1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL |
| CAI8003106.1 | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED |
| CAI8003108.1 | BCDNA.GH03377 |
| CAI8003110.1 | SUA5 |
| CAI8003112.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8003116.1 | PROTEIN SMF |
| CAI8003114.1 | PROTEIN SMF |
| CAI8003118.1 | |
| CAI8003128.1 | CYSTEINYL-TRNA SYNTHETASE |
| CAI8003130.1 | CYSTEINYL-TRNA SYNTHETASE |
| CAI8003124.1 | CYSTEINYL-TRNA SYNTHETASE |
| CAI8003126.1 | CYSTEINYL-TRNA SYNTHETASE |
| CAI8003122.1 | CYSTEINYL-TRNA SYNTHETASE |
| CAI8003120.1 | CYSTEINYL-TRNA SYNTHETASE |
| CAI8003132.1 | 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE, CHLOROPLASTIC |
| CAI8003134.1 | DNA REPAIR PROTEIN RADA |
| CAI8003136.1 | INTERMEMBRANE PHOSPHOLIPID TRANSPORT SYSTEM BINDING PROTEIN MLAD-RELATED |
| CAI8003140.1 | PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC |
| CAI8003138.1 | PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC |
| CAI8003142.1 | ABC TRANSPORTER PERMEASE PROTEIN-RELATED |
| CAI8003144.1 | REPLICATIVE DNA HELICASE DNAB |
| CAI8003146.1 | 50S RIBOSOMAL PROTEIN L9 |
| CAI8003148.1 | 30S RIBOSOMAL PROTEIN S18 |
| CAI8003150.1 | SINGLE-STRANDED DNA-BINDING PROTEIN |
| CAI8003152.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 |
| CAI8003154.1 | ARSENITE METHYLTRANSFERASE |
| CAI8003156.1 | - |
| CAI8003158.1 | - |
| CAI8003160.1 | |
| CAI8003162.1 | D-MALATE DEHYDROGENASE [DECARBOXYLATING] |
| CAI8003164.1 | D-MALATE DEHYDROGENASE [DECARBOXYLATING] |
| CAI8003168.1 | |
| CAI8003170.1 | EPH RECEPTOR A5 |
| CAI8003172.1 | |
| CAI8003174.1 | INTRAFLAGELLAR TRANSPORT PROTEIN 74 HOMOLOG |
| CAI8003184.1 | |
| CAI8003178.1 | |
| CAI8003180.1 | |
| CAI8003182.1 | |
| CAI8003186.1 | |
| CAI8003189.1 |
