Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8002601.1 | |
| CAI8002609.1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN |
| CAI8002611.1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN |
| CAI8002613.1 | P53 AND DNA DAMAGE-REGULATED PROTEIN |
| CAI8002615.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8002617.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8002626.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8002628.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8002624.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8002622.1 | |
| CAI8002620.1 | SOMETHING ABOUT SILENCING PROTEIN 10-RELATED |
| CAI8002631.1 | ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 26 |
| CAI8002633.1 | ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 26 |
| CAI8002632.1 | ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 26 |
| CAI8002630.1 | ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 26 |
| CAI8002629.1 | ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 26 |
| CAI8002634.1 | ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 26 |
| CAI8002635.1 | ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 26 |
| CAI8002636.1 | ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 26 |
| CAI8002637.1 | ZGC:174356 |
| CAI8002639.1 | ZGC:174356 |
| CAI8002638.1 | |
| CAI8002640.1 | ZGC:174356 |
| CAI8002641.1 | ZGC:174356 |
| CAI8002644.1 | PROMININ PROM PROTEIN |
| CAI8002643.1 | |
| CAI8002642.1 | |
| CAI8002645.1 | |
| CAI8002646.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 22 |
| CAI8002650.1 | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED |
| CAI8002649.1 | |
| CAI8002647.1 | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED |
| CAI8002648.1 | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED |
| CAI8002651.1 | |
| CAI8002652.1 | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED |
| CAI8002653.1 | |
| CAI8002654.1 | 4-CARBOXYMUCONOLACTONE DECARBOXYLASE FAMILY PROTEIN |
| CAI8002655.1 | |
| CAI8002656.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8002657.1 | ADENYLOSUCCINATE LYASE |
| CAI8002658.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURS |
| CAI8002659.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURQ |
| CAI8002660.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURQ |
| CAI8002661.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURQ |
| CAI8002666.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL |
| CAI8002663.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL |
| CAI8002662.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL |
| CAI8002664.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL |
| CAI8002665.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL |
| CAI8002669.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL |
