Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8002851.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA |
| CAI8002835.1 | |
| CAI8002837.1 | |
| CAI8002853.1 | SEVEN TRANSMEMBRANE PROTEIN 1-RELATED |
| CAI8002861.1 | |
| CAI8002859.1 | |
| CAI8002857.1 | |
| CAI8002855.1 | |
| CAI8002865.1 | |
| CAI8002863.1 | |
| CAI8002867.1 | |
| CAI8002869.1 | |
| CAI8002875.1 | CHLORIDE CHANNEL PROTEIN 2 |
| CAI8002873.1 | CHLORIDE CHANNEL PROTEIN 2 |
| CAI8002871.1 | |
| CAI8002879.1 | CHLORIDE CHANNEL PROTEIN 2 |
| CAI8002877.1 | CHLORIDE CHANNEL PROTEIN 2 |
| CAI8002887.1 | PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 |
| CAI8002881.1 | PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 |
| CAI8002885.1 | PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 |
| CAI8002883.1 | PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 |
| CAI8002889.1 | |
| CAI8002893.1 | RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT |
| CAI8002891.1 | RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT |
| CAI8002895.1 | |
| CAI8002899.1 | UNCHARACTERIZED |
| CAI8002897.1 | UNCHARACTERIZED |
| CAI8002901.1 | SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N |
| CAI8002905.1 | LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED |
| CAI8002903.1 | LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED |
| CAI8002907.1 | LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED |
| CAI8002909.1 | LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED |
| CAI8002913.1 | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED |
| CAI8002911.1 | |
| CAI8002915.1 | |
| CAI8002917.1 | |
| CAI8002920.1 | |
| CAI8002924.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8002922.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8002935.1 | |
| CAI8002937.1 | |
| CAI8002939.1 | |
| CAI8002953.1 | |
| CAI8002951.1 | |
| CAI8002947.1 | |
| CAI8002949.1 | |
| CAI8002945.1 | |
| CAI8002943.1 | |
| CAI8002941.1 | |
| CAI8002955.1 |
