Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8001897.1 | MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED |
| CAI8001895.1 | MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED |
| CAI8001899.1 | NUCLEAR RNA EXPORT FACTOR |
| CAI8001901.1 | MALEYLACETOACETATE ISOMERASE |
| CAI8001905.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8001903.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8001915.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8001913.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8001911.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8001917.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8001923.1 | FI17866P1 |
| CAI8001921.1 | FI17866P1 |
| CAI8001919.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| CAI8001925.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
| CAI8001934.1 | DOPAMINE BETA HYDROXYLASE RELATED |
| CAI8001936.1 | |
| CAI8001940.1 | PENICILLIN-BINDING PROTEIN |
| CAI8001938.1 | PENICILLIN-BINDING PROTEIN |
| CAI8001948.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| CAI8001946.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| CAI8001944.1 | |
| CAI8001942.1 | |
| CAI8001950.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| CAI8001952.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| CAI8001954.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| CAI8001960.1 | PROTEIN SIDEKICK |
| CAI8001958.1 | |
| CAI8001956.1 | |
| CAI8001962.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8001964.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8001966.1 | ADHESION G-PROTEIN COUPLED RECEPTOR V1 |
| CAI8001968.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8001970.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8001972.1 | |
| CAI8001974.1 | |
| CAI8001976.1 | |
| CAI8001978.1 | |
| CAI8001982.1 | |
| CAI8001984.1 | |
| CAI8001986.1 | |
| CAI8001988.1 | |
| CAI8001990.1 | |
| CAI8001992.1 | |
| CAI8001994.1 | |
| CAI8001997.1 | |
| CAI8001999.1 | FRUCTOSE-BISPHOSPHATE ALDOLASE CLASS 1 |
| CAI8002001.1 | |
| CAI8002003.1 | L-THREONINE 3-DEHYDROGENASE |
| CAI8002005.1 | |
| CAI8002007.1 |
