Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8001771.1 | |
| CAI8001773.1 | |
| CAI8001799.1 | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED |
| CAI8001801.1 | HISTONE H4 |
| CAI8001803.1 | MINA53 MYC INDUCED NUCLEAR ANTIGEN |
| CAI8001805.1 | |
| CAI8001809.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 69 |
| CAI8001807.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 69 |
| CAI8001811.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 |
| CAI8001825.1 | DIPEPTIDYL PEPTIDASE III-RELATED |
| CAI8001827.1 | DIPEPTIDYL PEPTIDASE III-RELATED |
| CAI8001819.1 | DIPEPTIDYL PEPTIDASE III-RELATED |
| CAI8001823.1 | DIPEPTIDYL PEPTIDASE III-RELATED |
| CAI8001821.1 | DIPEPTIDYL PEPTIDASE III-RELATED |
| CAI8001817.1 | DIPEPTIDYL PEPTIDASE III-RELATED |
| CAI8001815.1 | DIPEPTIDYL PEPTIDASE III-RELATED |
| CAI8001813.1 | DIPEPTIDYL PEPTIDASE III-RELATED |
| CAI8001829.1 | DIPEPTIDYL PEPTIDASE III-RELATED |
| CAI8001831.1 | DAMAGE-SPECIFIC DNA BINDING PROTEIN 2 |
| CAI8001841.1 | CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81 |
| CAI8001837.1 | CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81 |
| CAI8001835.1 | CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81 |
| CAI8001833.1 | CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81 |
| CAI8001839.1 | CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81 |
| CAI8001861.1 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF |
| CAI8001859.1 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF |
| CAI8001867.1 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF |
| CAI8001865.1 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF |
| CAI8001863.1 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF |
| CAI8001857.1 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF |
| CAI8001855.1 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF |
| CAI8001853.1 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF |
| CAI8001851.1 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF |
| CAI8001847.1 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF |
| CAI8001845.1 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF |
| CAI8001849.1 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF |
| CAI8001843.1 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF |
| CAI8001869.1 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF |
| CAI8001871.1 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF |
| CAI8001875.1 | |
| CAI8001873.1 | |
| CAI8001877.1 | MYELIN TRANSCRIPTION FACTOR 1-RELATED |
| CAI8001879.1 | |
| CAI8001885.1 | WD REPEAT-CONTAINING PROTEIN 75 |
| CAI8001887.1 | WD REPEAT-CONTAINING PROTEIN 75 |
| CAI8001883.1 | WD REPEAT-CONTAINING PROTEIN 75 |
| CAI8001881.1 | WD REPEAT-CONTAINING PROTEIN 75 |
| CAI8001889.1 | WD REPEAT-CONTAINING PROTEIN 75 |
| CAI8001891.1 | |
| CAI8001893.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
