Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8001621.1 | REGULATOR OF MICROTUBULE DYNAMICS PROTEIN |
| CAI8001622.1 | |
| CAI8001624.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8001623.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8001625.1 | |
| CAI8001626.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8001628.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 221 |
| CAI8001627.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 221 |
| CAI8001629.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 221 |
| CAI8001630.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 221 |
| CAI8001631.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 221 |
| CAI8001632.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 221 |
| CAI8001633.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 221 |
| CAI8001634.1 | |
| CAI8001635.1 | |
| CAI8001636.1 | BONUS, ISOFORM C-RELATED |
| CAI8001637.1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 |
| CAI8001638.1 | |
| CAI8001639.1 | I[[H]] CHANNEL, ISOFORM E |
| CAI8001640.1 | AGAP003327-PA |
| CAI8001641.1 | MYOSIN |
| CAI8001643.1 | |
| CAI8001642.1 | MYOSIN |
| CAI8001644.1 | OS01G0621700 PROTEIN |
| CAI8001646.1 | |
| CAI8001647.1 | |
| CAI8001645.1 | |
| CAI8001649.1 | |
| CAI8001648.1 | |
| CAI8001650.1 | PROTEIN TAG-278-RELATED |
| CAI8001651.1 | CYCLIN DEPENDANT KINASE-5 ACTIVATOR |
| CAI8001653.1 | ELONGATOR COMPLEX PROTEIN 2 |
| CAI8001652.1 | ELONGATOR COMPLEX PROTEIN 2 |
| CAI8001654.1 | ELONGATOR COMPLEX PROTEIN 2 |
| CAI8001656.1 | SOLUTE CARRIER FAMILY 2 |
| CAI8001657.1 | SOLUTE CARRIER FAMILY 2 |
| CAI8001655.1 | SOLUTE CARRIER FAMILY 2 |
| CAI8001658.1 | SOLUTE CARRIER FAMILY 2 |
| CAI8001659.1 | SOLUTE CARRIER FAMILY 2 |
| CAI8001660.1 | |
| CAI8001661.1 | SOLUTE CARRIER FAMILY 2 |
| CAI8001662.1 | |
| CAI8001663.1 | |
| CAI8001665.1 | |
| CAI8001664.1 | |
| CAI8001666.1 | |
| CAI8001667.1 | |
| CAI8001669.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| CAI8001668.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| CAI8001673.1 | TRANSLATION ELONGATION FACTOR-RELATED |
