Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8000444.1 | |
| CAI8000445.1 | |
| CAI8000446.1 | |
| CAI8000450.1 | |
| CAI8000447.1 | |
| CAI8000448.1 | |
| CAI8000449.1 | |
| CAI8000452.1 | |
| CAI8000453.1 | |
| CAI8000451.1 | |
| CAI8000454.1 | |
| CAI8000455.1 | |
| CAI8000460.1 | SH2 DOMAIN-CONTAINING PROTEIN |
| CAI8000462.1 | SH2 DOMAIN-CONTAINING PROTEIN |
| CAI8000458.1 | SH2 DOMAIN-CONTAINING PROTEIN |
| CAI8000457.1 | SH2 DOMAIN-CONTAINING PROTEIN |
| CAI8000456.1 | DIACYLGLYCEROL KINASE |
| CAI8000461.1 | SH2 DOMAIN-CONTAINING PROTEIN |
| CAI8000459.1 | SH2 DOMAIN-CONTAINING PROTEIN |
| CAI8000463.1 | SH2 DOMAIN-CONTAINING PROTEIN |
| CAI8000465.1 | SH2 DOMAIN-CONTAINING PROTEIN |
| CAI8000464.1 | SH2 DOMAIN-CONTAINING PROTEIN |
| CAI8000466.1 | SH2 DOMAIN-CONTAINING PROTEIN |
| CAI8000467.1 | DESUMOYLATING ISOPEPTIDASE |
| CAI8000468.1 | DESUMOYLATING ISOPEPTIDASE |
| CAI8000469.1 | |
| CAI8000470.1 | |
| CAI8000471.1 | |
| CAI8000472.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8000474.1 | PROTEIN CBR-CLEC-78 |
| CAI8000473.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8000475.1 | |
| CAI8000476.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8000477.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8000480.1 | IMPORTIN BETA |
| CAI8000479.1 | IMPORTIN BETA |
| CAI8000478.1 | IMPORTIN BETA |
| CAI8000481.1 | METHIONINE SYNTHASE |
| CAI8000482.1 | |
| CAI8000484.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8000483.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8000485.1 | |
| CAI8000486.1 | |
| CAI8000487.1 | |
| CAI8000488.1 | OS01G0253100 PROTEIN |
| CAI8000489.1 | BONUS, ISOFORM C-RELATED |
| CAI8000490.1 | MYOTUBULARIN-RELATED |
| CAI8000491.1 | MYOTUBULARIN-RELATED |
| CAI8000493.1 | MYOTUBULARIN-RELATED |
| CAI8000494.1 | MYOTUBULARIN-RELATED |
