Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8000262.1 | |
| CAI8000265.1 | |
| CAI8000267.1 | |
| CAI8000273.1 | |
| CAI8000271.1 | |
| CAI8000269.1 | |
| CAI8000284.1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
| CAI8000286.1 | |
| CAI8000288.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL |
| CAI8000290.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8000292.1 | OCTANOYLTRANSFERASE |
| CAI8000296.1 | |
| CAI8000294.1 | |
| CAI8000298.1 | |
| CAI8000300.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8000302.1 | ASPARTATE AMINOTRANSFERASE YHDR-RELATED |
| CAI8000306.1 | PTHR43509 |
| CAI8000304.1 | PTHR43509 |
| CAI8000308.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8000310.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8000312.1 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
| CAI8000314.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8000316.1 | DUDULIN-RELATED |
| CAI8000318.1 | |
| CAI8000320.1 | |
| CAI8000322.1 | |
| CAI8000326.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8000332.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8000328.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8000330.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8000334.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8000324.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8000336.1 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 |
| CAI8000339.1 | |
| CAI8000345.1 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| CAI8000347.1 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| CAI8000349.1 | NNMT/PNMT/TEMT FAMILY MEMBER |
| CAI8000353.1 | |
| CAI8000355.1 | |
| CAI8000351.1 | |
| CAI8000357.1 | |
| CAI8000359.1 | |
| CAI8000361.1 | |
| CAI8000363.1 | |
| CAI8000380.1 | COBW-RELATED |
| CAI8000382.1 | TRANSMEMBRANE PROTEIN WITH METALLOPHOSPHOESTERASE DOMAIN-RELATED |
| CAI8000392.1 | AMSH-LIKE PROTEASE |
| CAI8000394.1 | AMSH-LIKE PROTEASE |
| CAI8000390.1 | AMSH-LIKE PROTEASE |
| CAI8000388.1 | AMSH-LIKE PROTEASE |
