Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7999676.1 | L-FUCOSE KINASE |
| CAI7999678.1 | L-FUCOSE KINASE |
| CAI7999680.1 | |
| CAI7999682.1 | |
| CAI7999684.1 | MITOCHONDRIA-EATING PROTEIN-RELATED |
| CAI7999690.1 | |
| CAI7999688.1 | DDRGK DOMAIN-CONTAINING PROTEIN 1 |
| CAI7999686.1 | |
| CAI7999692.1 | |
| CAI7999700.1 | |
| CAI7999702.1 | |
| CAI7999704.1 | |
| CAI7999706.1 | METALLOPROTEASE |
| CAI7999708.1 | |
| CAI7999710.1 | MEMBRANE COMPONENT OF TRANSPORTER-RELATED |
| CAI7999712.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI7999714.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI7999716.1 | ANAEROBIC MAGNESIUM-PROTOPORPHYRIN IX MONOMETHYL ESTER CYCLASE-RELATED |
| CAI7999718.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI7999720.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI7999722.1 | MALONYL-COA-ACYL CARRIER PROTEIN TRANSACYLASE, MITOCHONDRIAL |
| CAI7999724.1 | MALONYL-COA-ACYL CARRIER PROTEIN TRANSACYLASE, MITOCHONDRIAL |
| CAI7999726.1 | 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 3 |
| CAI7999728.1 | ASPARTATE KINASE |
| CAI7999730.1 | HYDROXYPYRUVATE ISOMERASE |
| CAI7999732.1 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE |
| CAI7999734.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI7999743.1 | STROMAL ANTIGEN |
| CAI7999741.1 | STROMAL ANTIGEN |
| CAI7999745.1 | STROMAL ANTIGEN |
| CAI7999749.1 | STROMAL ANTIGEN |
| CAI7999747.1 | STROMAL ANTIGEN |
| CAI7999755.1 | |
| CAI7999757.1 | |
| CAI7999751.1 | |
| CAI7999753.1 | |
| CAI7999759.1 | |
| CAI7999761.1 | |
| CAI7999763.1 | |
| CAI7999765.1 | |
| CAI7999768.1 | OS10G0105400 PROTEIN |
| CAI7999770.1 | OS10G0105400 PROTEIN |
| CAI7999775.1 | |
| CAI7999773.1 | |
| CAI7999777.1 | |
| CAI7999804.1 | NUCLEOPORIN NUP84-RELATED |
| CAI7999806.1 | |
| CAI7999808.1 | |
| CAI7999810.1 | |
| CAI7999812.1 | COILIN P80 |
