Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7999442.1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| CAI7999446.1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| CAI7999444.1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| CAI7999448.1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE 19 |
| CAI7999454.1 | |
| CAI7999456.1 | |
| CAI7999458.1 | |
| CAI7999460.1 | 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED |
| CAI7999462.1 | 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED |
| CAI7999464.1 | DEHYDROGENASE/REDUCTASE (SDR FAMILY) MEMBER 4 |
| CAI7999466.1 | CHOLINE MONOOXYGENASE, CHLOROPLASTIC |
| CAI7999468.1 | BLR3401 PROTEIN |
| CAI7999470.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI7999472.1 | ABC TRANSPORTER ATP-BINDING SUBUNIT |
| CAI7999474.1 | CALCIUM DODECIN |
| CAI7999476.1 | 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE |
| CAI7999480.1 | COPPER AMINE OXIDASE |
| CAI7999478.1 | COPPER AMINE OXIDASE |
| CAI7999482.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI7999484.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI7999486.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI7999488.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI7999490.1 | PAREP8-RELATED |
| CAI7999492.1 | |
| CAI7999494.1 | PEPTIDASE S9 PROLYL OLIGOPEPTIDASE |
| CAI7999496.1 | UPF0173 METAL-DEPENDENT HYDROLASE YTKL |
| CAI7999498.1 | BIOTIN TRANSPORTER BIOY |
| CAI7999500.1 | |
| CAI7999502.1 | DNA POLYMERASE III SUBUNIT ALPHA |
| CAI7999504.1 | |
| CAI7999525.1 | CATION EFFLUX PROTEIN/ ZINC TRANSPORTER |
| CAI7999527.1 | CATION EFFLUX PROTEIN/ ZINC TRANSPORTER |
| CAI7999531.1 | CATION EFFLUX PROTEIN/ ZINC TRANSPORTER |
| CAI7999529.1 | CATION EFFLUX PROTEIN/ ZINC TRANSPORTER |
| CAI7999541.1 | ASPARTYL-TRNA SYNTHETASE |
| CAI7999537.1 | ASPARTYL-TRNA SYNTHETASE |
| CAI7999539.1 | ASPARTYL-TRNA SYNTHETASE |
| CAI7999543.1 | ASPARTYL-TRNA SYNTHETASE |
| CAI7999547.1 | ASPARTYL-TRNA SYNTHETASE |
| CAI7999545.1 | ASPARTYL-TRNA SYNTHETASE |
| CAI7999535.1 | THYROTROPH EMBRYONIC FACTOR RELATED |
| CAI7999533.1 | THYROTROPH EMBRYONIC FACTOR RELATED |
| CAI7999549.1 | ETS |
| CAI7999551.1 | ETS |
| CAI7999553.1 | |
| CAI7999555.1 | |
| CAI7999567.1 | LD22376P |
| CAI7999565.1 | LD22376P |
| CAI7999563.1 | LD22376P |
| CAI7999561.1 | LD22376P |
