Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_18985-0.40 | CEREBELLIN-RELATED |
| Bpl_scaf_18985-0.41 | |
| Bpl_scaf_18994-0.10 | |
| Bpl_scaf_18994-0.9 | |
| Bpl_scaf_190-0.4 | |
| Bpl_scaf_1900-0.0 | GLYCOSYLTRANSFERASE |
| Bpl_scaf_19002-0.0 | |
| Bpl_scaf_19010-0.0 | |
| Bpl_scaf_19010-0.13 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_19010-0.4 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_19010-0.5 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_19010-0.6 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_19010-0.7 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_19010-0.8 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_19010-1.11 | MIR-INTERACTING SAPOSIN-LIKE PROTEIN |
| Bpl_scaf_19010-1.19 | PROTEASOME ASSEMBLY CHAPERONE 4 |
| Bpl_scaf_19010-1.4 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_19010-1.8 | |
| Bpl_scaf_19010-1.9 | METHIONINE AMINOPEPTIDASE |
| Bpl_scaf_19010-10.6 | RING FINGER AND KH DOMAIN CONTAINING PROTEIN 1 |
| Bpl_scaf_19010-13.6 | VILLIN |
| Bpl_scaf_19010-14.5 | SUPERKILLER 3 PROTEIN-RELATED |
| Bpl_scaf_19010-15.14 | TUMOR NECROSIS FACTOR FAMILY MEMBER |
| Bpl_scaf_19010-15.3 | MANNOSYL PHOSPHORYLINOSITOL CERAMIDE SYNTHASE |
| Bpl_scaf_19010-15.4 | RAS GTPASE-ACTIVATING PROTEINS |
| Bpl_scaf_19010-15.6 | PUTATIVE (AFU_ORTHOLOGUE AFUA_4G14580)-RELATED |
| Bpl_scaf_19010-4.0 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_19010-5.17 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_19010-5.9 | SIMILAR TO ENSANGP00000021391 |
| Bpl_scaf_19010-6.0 | |
| Bpl_scaf_19010-6.10 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_19010-6.3 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_19010-6.8 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_19010-8.13 | |
| Bpl_scaf_19010-8.14 | UNCHARACTERIZED |
| Bpl_scaf_19010-8.22 | DELTEX-RELATED |
| Bpl_scaf_19010-9.15 | CASEIN KINASE-RELATED |
| Bpl_scaf_19010-9.5 | THYROID RECEPTOR INTERACTING PROTEIN RELATED |
| Bpl_scaf_19011-0.12 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_19011-0.2 | COILED-COIL DOMAIN-CONTAINING PROTEIN 180 |
| Bpl_scaf_19011-0.3 | |
| Bpl_scaf_19020-0.1 | |
| Bpl_scaf_19020-0.2 | |
| Bpl_scaf_19034-0.10 | PROTEIN TORNADO 1 |
| Bpl_scaf_19034-0.3 | |
| Bpl_scaf_19034-0.5 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_1905-0.5 | DIMETHYLANILINE MONOOXYGENASE |
| Bpl_scaf_1905-1.11 | TRANSCRIPTION INITIATION FACTOR TFIID |
| Bpl_scaf_1905-1.29 | DIMETHYLANILINE MONOOXYGENASE |
| Bpl_scaf_1905-1.30 |
