Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_19139-1.11 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_19139-1.12 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| Bpl_scaf_19139-1.13 | ATP-DEPENDENT DNA HELICASE |
| Bpl_scaf_1914-0.4 | EPH RECEPTOR A5 |
| Bpl_scaf_19142-0.4 | MUCIN 4-RELATED |
| Bpl_scaf_19144-0.0 | |
| Bpl_scaf_19149-0.22 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_19149-0.7 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
| Bpl_scaf_19149-1.17 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_19149-1.18 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_19149-1.19 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_19149-1.3 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_19149-1.34 | |
| Bpl_scaf_19158-0.5 | |
| Bpl_scaf_19158-1.0 | |
| Bpl_scaf_19158-1.2 | |
| Bpl_scaf_19158-1.4 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_19158-1.5 | PROTEIN STAR |
| Bpl_scaf_19158-2.0 | |
| Bpl_scaf_19158-2.11 | |
| Bpl_scaf_1916-2.5 | POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY KQT MEMBER 4 |
| Bpl_scaf_1916-2.7 | POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY KQT MEMBER 4 |
| Bpl_scaf_1916-2.8 | |
| Bpl_scaf_1916-3.18 | |
| Bpl_scaf_1916-3.8 | MYOSIN LIGHT CHAIN 1, 3 |
| Bpl_scaf_19165-0.1 | |
| Bpl_scaf_19166-0.6 | |
| Bpl_scaf_19166-1.11 | |
| Bpl_scaf_19166-1.14 | |
| Bpl_scaf_19166-1.20 | RAB GDP-DISSOCIATION INHIBITOR |
| Bpl_scaf_19166-2.11 | |
| Bpl_scaf_19166-2.9 | |
| Bpl_scaf_19168-0.2 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_19168-0.5 | |
| Bpl_scaf_19171-0.0 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_19173-0.5 | |
| Bpl_scaf_19175-0.0 | |
| Bpl_scaf_19175-1.6 | ANNEXIN |
| Bpl_scaf_19175-1.9 | ANNEXIN |
| Bpl_scaf_19175-2.10 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
| Bpl_scaf_19175-2.7 | SARCOMA ANTIGEN NY-SAR-24/CYTOSKELETAL PROTEIN SOJO |
| Bpl_scaf_19175-2.8 | RIBOSOMAL PROTEIN L5-RELATED |
| Bpl_scaf_19175-2.9 | SARCOMA ANTIGEN NY-SAR-24/CYTOSKELETAL PROTEIN SOJO |
| Bpl_scaf_19180-0.5 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_19183-0.2 | ZGC:195170 |
| Bpl_scaf_19187-0.7 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8 |
| Bpl_scaf_19187-0.9 | |
| Bpl_scaf_19187-1.4 | |
| Bpl_scaf_19187-2.3 | |
| Bpl_scaf_19187-2.8 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
