Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_18655-2.0 | PDF RECEPTOR-LIKE PROTEIN-RELATED |
| Bpl_scaf_18655-3.1 | |
| Bpl_scaf_18655-3.10 | C2H2 ZINC FINGER CGI-62-RELATED |
| Bpl_scaf_18655-3.11 | MYOTUBULARIN-RELATED |
| Bpl_scaf_18655-3.12 | PROTEIN LKAAEAR1 |
| Bpl_scaf_18655-3.13 | RECEPTOR-BINDING CANCER ANTIGEN EXPRESSED ON SISO CELLS CANCER ASSOCIATED SURFACE ANTIGEN RCAS1 ESTROGEN RECEPTOR-BINDING FRAGMENT- ASSOCIATED GENE 9 PROTEIN |
| Bpl_scaf_18655-3.5 | BINDING OXIDOREDUCTASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G17690)-RELATED |
| Bpl_scaf_1866-0.4 | WD40 DOMAIN-CONTAINING PROTEIN MIO FAMILY MEMBER |
| Bpl_scaf_1866-1.1 | |
| Bpl_scaf_1866-1.8 | ANKYRIN REPEAT-CONTAINING |
| Bpl_scaf_1866-1.9 | COILED-COIL DOMAIN-CONTAINING PROTEIN 89 |
| Bpl_scaf_1866-2.10 | |
| Bpl_scaf_1866-2.18 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_1866-2.19 | PHOSPHATASE, ORPHAN 1, 2 |
| Bpl_scaf_1866-2.20 | PER1-RELATED |
| Bpl_scaf_1866-2.21 | COILED-COIL DOMAIN-CONTAINING PROTEIN 173 |
| Bpl_scaf_1866-2.22 | ANNEXIN |
| Bpl_scaf_1866-2.23 | |
| Bpl_scaf_1866-2.24 | ANNEXIN |
| Bpl_scaf_1866-2.25 | FORMATE DEHYDROGENASE 1 |
| Bpl_scaf_18661-0.0 | BEN DOMAIN-CONTAINING PROTEIN 3 |
| Bpl_scaf_18674-0.0 | PIRNA BIOGENESIS PROTEIN EXD1 |
| Bpl_scaf_18681-0.11 | NEPHRIN |
| Bpl_scaf_18681-0.12 | |
| Bpl_scaf_18682-1.10 | ARRESTIN DOMAIN-CONTAINING PROTEIN D |
| Bpl_scaf_18682-1.24 | DRONGO, ISOFORM F |
| Bpl_scaf_18682-1.9 | CADHERIN-87A |
| Bpl_scaf_18682-2.4 | NANOS PROTEIN |
| Bpl_scaf_18682-2.5 | CYTOSOLIC PHOSPHOLIPASE A2 |
| Bpl_scaf_18682-4.23 | RAS GTPASE-ACTIVATING PROTEINS |
| Bpl_scaf_18682-4.24 | TUMOR NECROSIS FACTOR FAMILY MEMBER |
| Bpl_scaf_18682-4.25 | B30.2/SPRY DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_18694-0.2 | SURFACE ANTIGEN BSPA-LIKE-RELATED |
| Bpl_scaf_18700-0.4 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_18711-0.0 | |
| Bpl_scaf_18740-0.0 | |
| Bpl_scaf_18746-0.1 | OLFACTOMEDIN-RELATED |
| Bpl_scaf_18754-0.3 | |
| Bpl_scaf_18763-0.1 | |
| Bpl_scaf_18763-0.5 | |
| Bpl_scaf_18775-0.1 | TRANSMEMBRANE 7 SUPERFAMILY MEMBER 3 |
| Bpl_scaf_18776-0.20 | |
| Bpl_scaf_18776-0.21 | TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNIT |
| Bpl_scaf_18776-0.4 | CEREBELLIN-RELATED |
| Bpl_scaf_18776-0.6 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 |
| Bpl_scaf_18776-2.3 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Bpl_scaf_18776-2.7 | |
| Bpl_scaf_18776-3.2 | F-BOX ONLY PROTEIN |
| Bpl_scaf_18776-4.11 | EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN |
| Bpl_scaf_18776-4.12 | RAS-RELATED PROTEIN RAB |
