Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_19361-10.17 | CENTAURIN/ARF |
| Bpl_scaf_19361-10.18 | CENTAURIN/ARF |
| Bpl_scaf_19361-10.2 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_19361-10.7 | |
| Bpl_scaf_19361-11.12 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
| Bpl_scaf_19361-11.15 | ENOLASE |
| Bpl_scaf_19361-11.42 | UREASE ACCESSORY PROTEIN D |
| Bpl_scaf_19361-11.43 | |
| Bpl_scaf_19361-11.7 | |
| Bpl_scaf_19361-2.2 | DEP DOMAIN PROTEIN |
| Bpl_scaf_19361-2.5 | UNCHARACTERIZED |
| Bpl_scaf_19361-2.8 | UNCHARACTERIZED |
| Bpl_scaf_19361-3.3 | ANKYRIN REPEAT FAMILY PROTEIN |
| Bpl_scaf_19361-4.2 | INWARD RECTIFIER POTASSIUM CHANNEL |
| Bpl_scaf_19361-5.1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_19361-5.2 | |
| Bpl_scaf_19361-6.3 | RETINAL PROTEIN 4 |
| Bpl_scaf_19361-7.22 | UNCHARACTERIZED PROTEIN C1ORF50 |
| Bpl_scaf_19361-7.23 | T7-LIKE MITOCHONDRIAL DNA HELICASE |
| Bpl_scaf_19361-7.6 | |
| Bpl_scaf_19361-8.13 | F20B24.22 |
| Bpl_scaf_19361-8.5 | GLYCOLIPID TRANSFER PROTEIN-RELATED |
| Bpl_scaf_19361-8.6 | |
| Bpl_scaf_19361-9.11 | POTE ANKYRIN DOMAIN |
| Bpl_scaf_19361-9.12 | |
| Bpl_scaf_19363-0.3 | |
| Bpl_scaf_19369-0.4 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_19369-0.5 | |
| Bpl_scaf_19372-0.4 | THO COMPLEX SUBUNIT 3 THO3 |
| Bpl_scaf_19372-0.5 | CDK2-ASSOCIATED AND CULLIN DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_19372-1.6 | UNCHARACTERIZED |
| Bpl_scaf_19372-1.7 | GLUTAMATE SEMIALDEHYDE DEHYDROGENASE |
| Bpl_scaf_19372-2.10 | RIM BINDING PROTEIN-RELATED |
| Bpl_scaf_19372-2.14 | |
| Bpl_scaf_19372-2.5 | |
| Bpl_scaf_19372-3.14 | TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 |
| Bpl_scaf_19372-3.2 | |
| Bpl_scaf_19374-0.1 | H2HPP ISOMERASE |
| Bpl_scaf_19377-0.0 | |
| Bpl_scaf_19381-1.12 | SRCR DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_19381-1.14 | SRCR DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_19381-1.19 | SRCR DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_19381-1.2 | |
| Bpl_scaf_19381-1.4 | |
| Bpl_scaf_19381-2.3 | REVERSE TRANSCRIPTASE |
| Bpl_scaf_19382-0.0 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_19382-0.1 | AGAP008170-PA |
| Bpl_scaf_19383-0.5 | VASCULAR CELL ADHESION MOLECULE 1 |
| Bpl_scaf_19385-0.1 | CEREBELLIN-RELATED |
| Bpl_scaf_19386-0.1 | SRCR DOMAIN-CONTAINING PROTEIN |
