The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides50931 | BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER |
| Paelopatides50932 | |
| Paelopatides50933 | BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER |
| Paelopatides50934 | AGAP001623-PA |
| Paelopatides50935 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
| Paelopatides50937 | RETROTRANSPOSON |
| Paelopatides50938 | RETROTRANSPOSON |
| Paelopatides50939 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Paelopatides50940 | |
| Paelopatides50941 | |
| Paelopatides50942 | UNR PROTEIN N-RAS UPSTREAM GENE PROTEIN |
| Paelopatides50943 | TYROSINE-PROTEIN KINASE |
| Paelopatides50944 | |
| Paelopatides50945 | |
| Paelopatides50946 | |
| Paelopatides50947 | TWINFILIN |
| Paelopatides50948 | |
| Paelopatides50949 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides50950 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides50951 | GLUTAMATE RECEPTOR-INTERACTING PROTEIN GRIP |
| Paelopatides50952 | GLUTAMATE RECEPTOR-INTERACTING PROTEIN GRIP |
| Paelopatides50953 | NINJURIN-RELATED |
| Paelopatides50954 | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED |
| Paelopatides50955 | |
| Paelopatides50956 | SODIUM-BILE ACID COTRANSPORTER |
| Paelopatides50957 | |
| Paelopatides50958 | F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides50959 | BUCENTAUR RELATED |
| Paelopatides50960 | REVERSE TRANSCRIPTASES |
| Paelopatides50961 | REVERSE TRANSCRIPTASES |
| Paelopatides50962 | |
| Paelopatides50963 | |
| Paelopatides50964 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides50965 | |
| Paelopatides50966 | |
| Paelopatides50967 | |
| Paelopatides50968 | |
| Paelopatides50974 | |
| Paelopatides50975 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides50976 | INACTIVE TYROSINE-PROTEIN KINASE 7 |
| Paelopatides50977 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Paelopatides50978 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Paelopatides50979 | RETROTRANSPOSON |
| Paelopatides50980 | RETROTRANSPOSON |
| Paelopatides50981 | |
| Paelopatides50982 | CATION CHANNEL SPERM-ASSOCIATED PROTEIN SUBUNIT GAMMA |
| Paelopatides50983 | IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS |
| Paelopatides50984 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides50985 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides50986 | SYNAPTIC ADHESION-LIKE MOLECULE SALM |
