The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides50719 | |
| Paelopatides50720 | |
| Paelopatides50721 | |
| Paelopatides50722 | NECTIN-RELATED |
| Paelopatides50723 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides50724 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides50725 | |
| Paelopatides50726 | |
| Paelopatides50727 | |
| Paelopatides50728 | IP13529P |
| Paelopatides50729 | FACT COMPLEX SUBUNIT SSRP1 |
| Paelopatides50731 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides50732 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides50733 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| Paelopatides50734 | |
| Paelopatides50735 | |
| Paelopatides50736 | |
| Paelopatides50739 | NACHT DOMAIN-CONTAINING PROTEIN |
| Paelopatides50740 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
| Paelopatides50741 | ALPHA-TECTORIN-RELATED |
| Paelopatides50742 | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED |
| Paelopatides50743 | 4-NITROPHENYLPHOSPHATASE-RELATED |
| Paelopatides50744 | RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED |
| Paelopatides50745 | ENDONUCLEASE |
| Paelopatides50746 | ENDONUCLEASE-RELATED |
| Paelopatides50747 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
| Paelopatides50748 | |
| Paelopatides50749 | PKSB |
| Paelopatides50750 | YIPPEE DOMAIN-CONTAINING PROTEIN |
| Paelopatides50751 | NUCLEOPORIN-LIKE PROTEIN 2 |
| Paelopatides50752 | |
| Paelopatides50753 | ENZYMATIC POLYPROTEIN-RELATED |
| Paelopatides50754 | |
| Paelopatides50755 | |
| Paelopatides50757 | SELENOPROTEIN T |
| Paelopatides50758 | MISSHAPEN LIKE KINASE 1 |
| Paelopatides50759 | MISSHAPEN LIKE KINASE 1 |
| Paelopatides50760 | |
| Paelopatides50761 | TUBULIN |
| Paelopatides50762 | TUBULIN |
| Paelopatides50763 | TUBULIN |
| Paelopatides50764 | UBIQUITIN-PROTEIN LIGASE E3C |
| Paelopatides50765 | CHOLESTEROL OXIDASE |
| Paelopatides50766 | |
| Paelopatides50767 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides50768 | |
| Paelopatides50774 | LEPRECAN 1 |
| Paelopatides50775 | PROTEIN LYSINE HYDROXYLATION COMPLEX COMPONENT |
| Paelopatides50776 | |
| Paelopatides50777 |
