The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides50039 | |
| Paelopatides50040 | DETERIN |
| Paelopatides50041 | UNCHARACTERIZED |
| Paelopatides50042 | PROTEIN KINASE C, MU |
| Paelopatides50043 | SI:CH211-108C17.2-RELATED-RELATED |
| Paelopatides50044 | ZGC:195170 |
| Paelopatides50045 | TRANSCRIPTION INITIATION FACTOR IA RRN3 |
| Paelopatides50046 | - |
| Paelopatides50047 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Paelopatides50048 | OPSIN |
| Paelopatides50049 | CENTROMERE PROTEIN M |
| Paelopatides50050 | |
| Paelopatides50051 | ACYL-MALONYL CONDENSING ENZYME-RELATED |
| Paelopatides50052 | |
| Paelopatides50053 | |
| Paelopatides50054 | GLUTAMATE CYSTEINE LIGASE |
| Paelopatides50055 | F-BOX/WD REPEAT-CONTAINING PROTEIN 2 |
| Paelopatides50056 | |
| Paelopatides50057 | |
| Paelopatides50058 | |
| Paelopatides50059 | |
| Paelopatides50060 | ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE |
| Paelopatides50061 | 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE-RELATED |
| Paelopatides50062 | |
| Paelopatides50063 | FATTY ACID ACYL TRANSFERASE-RELATED |
| Paelopatides50064 | FATTY ACID ACYL TRANSFERASE-RELATED |
| Paelopatides50065 | FATTY ACID ACYL TRANSFERASE-RELATED |
| Paelopatides50066 | RETROTRANSPOSON |
| Paelopatides50067 | EXODEOXYRIBONUCLEASE III |
| Paelopatides50068 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides50069 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides50070 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides50071 | PROTEIN CBG26694 |
| Paelopatides50072 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Paelopatides50073 | |
| Paelopatides50074 | TRANSLATION ELONGATION FACTOR-RELATED |
| Paelopatides50075 | TRANSLATION ELONGATION FACTOR-RELATED |
| Paelopatides50076 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides50077 | RIIA DOMAIN-CONTAINING PROTEIN 1 |
| Paelopatides50078 | PROTEIN CBG26694 |
| Paelopatides50079 | ENZYMATIC POLYPROTEIN-RELATED |
| Paelopatides50080 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides50081 | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED |
| Paelopatides50082 | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED |
| Paelopatides50083 | DENTIN MATRIX PROTEIN 4 PROTEIN FAM20 |
| Paelopatides50084 | DENTIN MATRIX PROTEIN 4 PROTEIN FAM20 |
| Paelopatides50085 | SPINSTER |
| Paelopatides50086 | 50S/60S RIBOSOMAL PROTEIN L16 |
| Paelopatides50087 | |
| Paelopatides50088 |
