About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40%57,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49938
Paelopatides49939ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides49940SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 3
Paelopatides49941MORTALITY FACTOR 4-LIKE PROTEIN
Paelopatides49942SUCCINYL-COA--D-CITRAMALATE COA-TRANSFERASE
Paelopatides49943PROTEIN CBG26694
Paelopatides49944PIG-M MANNOSYLTRANSFERASE
Paelopatides49945PIG-M MANNOSYLTRANSFERASE
Paelopatides49946PHOSPHATIDYLINOSITOL GLYCAN, CLASS N
Paelopatides49947PHOSPHATIDYLINOSITOL GLYCAN, CLASS N
Paelopatides49948PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides49949RETROTRANSPOSON
Paelopatides49950RETROTRANSPOSON
Paelopatides49951LYR MOTIF-CONTAINING PROTEIN 1
Paelopatides49952
Paelopatides49953
Paelopatides49954
Paelopatides49955PROTEIN PHOSPHATASE 2C
Paelopatides49956RP42 RELATED
Paelopatides49957
Paelopatides49958
Paelopatides49959GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA
Paelopatides49960CATION-TRANSPORTING ATPASE-RELATED
Paelopatides49961DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides49962CYCLIN
Paelopatides49963DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides4996439S RIBOSOMAL PROTEIN L20
Paelopatides49965
Paelopatides49966APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Paelopatides49967
Paelopatides49968
Paelopatides49969
Paelopatides49970OXIDOREDUCTASE-RELATED
Paelopatides49971OPSIN
Paelopatides49972BONUS, ISOFORM C-RELATED
Paelopatides49973BONUS, ISOFORM C-RELATED
Paelopatides49974
Paelopatides49975NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides49976CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED
Paelopatides49977REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides49978RING FINGER PROTEIN 127
Paelopatides49979MYELIN PROTEOLIPID
Paelopatides49980RING BOX
Paelopatides49981ENGULFMENT AND CELL MOTILITY
Paelopatides49982PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides49983
Paelopatides49985ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides49986
Paelopatides49987TYROSINE-PROTEIN KINASE
Paelopatides49988
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