About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40%57,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides49724
Paelopatides49725STEROL O-ACYLTRANSFERASE
Paelopatides49726
Paelopatides49727PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides49728
Paelopatides49729SLIT HOMOLOG
Paelopatides49730CRUMBS FAMILY MEMBER
Paelopatides49731
Paelopatides49732
Paelopatides49733CENTROSOMAL PROTEIN-RELATED
Paelopatides49734GAF/PUTATIVE CYTOSKELETAL PROTEIN
Paelopatides49735WD40 REPEAT FAMILY
Paelopatides49736
Paelopatides49737SLR1189 PROTEIN
Paelopatides49738
Paelopatides49739
Paelopatides49740D-ALANYL-D-ALANINE CARBOXYPEPTIDASE
Paelopatides49741ENDONUCLEASE-RELATED
Paelopatides49742MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23
Paelopatides49743MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23
Paelopatides49744GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
Paelopatides49745ZINC FINGER AND BTB DOMAIN-CONTAINING
Paelopatides49746PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE
Paelopatides49747BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Paelopatides49748
Paelopatides49749ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides49750FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides49751CYTOCHROME P450 FAMILY 3
Paelopatides49752TESTIS-SPECIFIC Y-ENCODED PROTEIN
Paelopatides49753EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I
Paelopatides49754
Paelopatides49755FANCONI-ASSOCIATED NUCLEASE 1
Paelopatides49756
Paelopatides49758KATANIN P80 SUBUNIT
Paelopatides49759MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM21
Paelopatides49760CYCLINS
Paelopatides49761
Paelopatides49762
Paelopatides49763ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides49764CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides49765
Paelopatides49766TOL-PAL SYSTEM PROTEIN TOLA
Paelopatides49767TOL-PAL SYSTEM PROTEIN TOLA
Paelopatides49768TOL-PAL SYSTEM PROTEIN TOLA
Paelopatides49769TOL-PAL SYSTEM PROTEIN TOLA
Paelopatides49770TOL-PAL SYSTEM PROTEIN TOLA
Paelopatides49771TOL-PAL SYSTEM PROTEIN TOLA
Paelopatides49772COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Paelopatides49773-
Paelopatides49774TRANSCRIPTIONAL REPRESSOR PROTEIN YY
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