The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides49989 | RETROTRANSPOSON |
| Paelopatides49990 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Paelopatides49991 | SEPIAPTERIN REDUCTASE |
| Paelopatides49992 | |
| Paelopatides49993 | |
| Paelopatides49994 | |
| Paelopatides49995 | GC-RICH SEQUENCE DNA-BINDING FACTOR |
| Paelopatides49996 | GC-RICH SEQUENCE DNA-BINDING FACTOR |
| Paelopatides49997 | HISTONE DEACETYLASE HDAC1-RELATED |
| Paelopatides49998 | TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED |
| Paelopatides49999 | GI:13385330 |
| Paelopatides50000 | GI:13385330 |
| Paelopatides50001 | 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED |
| Paelopatides50002 | TRANSLATION FACTOR GUF1-RELATED |
| Paelopatides50003 | |
| Paelopatides50004 | 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED |
| Paelopatides50005 | HISTIDINE AMMONIA-LYASE |
| Paelopatides50006 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
| Paelopatides50007 | POL PROTEIN |
| Paelopatides50008 | HOST CELL FACTOR |
| Paelopatides50009 | HOST CELL FACTOR |
| Paelopatides50010 | UNCHARACTERIZED |
| Paelopatides50011 | |
| Paelopatides50012 | CXXC-TYPE ZINC FINGER PROTEIN 1 |
| Paelopatides50013 | EPM2A-INTERACTING PROTEIN 1 |
| Paelopatides50014 | CXXC-TYPE ZINC FINGER PROTEIN 1 |
| Paelopatides50015 | 39S RIBOSOMAL PROTEIN L46, MITOCHONDRIAL PRECURSOR-RELATED |
| Paelopatides50016 | RNA-BINDING PROTEIN |
| Paelopatides50017 | |
| Paelopatides50018 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides50019 | |
| Paelopatides50020 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides50021 | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER |
| Paelopatides50022 | 34 KDA TRANSCRIPTIONAL CO-ACTIVATOR-RELATED |
| Paelopatides50023 | |
| Paelopatides50024 | |
| Paelopatides50025 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides50026 | |
| Paelopatides50027 | NUCLEOBINDIN |
| Paelopatides50028 | |
| Paelopatides50029 | TRANSCRIPTION INITIATION FACTOR IIH-RELATED |
| Paelopatides50030 | TRANSCRIPTION INITIATION FACTOR IIH-RELATED |
| Paelopatides50031 | SLR5058 PROTEIN |
| Paelopatides50032 | |
| Paelopatides50033 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
| Paelopatides50034 | BUCENTAUR RELATED |
| Paelopatides50035 | |
| Paelopatides50036 | |
| Paelopatides50037 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides50038 |
