The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides47553 | |
| Paelopatides47554 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides47555 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides47556 | BEN DOMAIN-CONTAINING PROTEIN 5 |
| Paelopatides47557 | TRANSPOSON TY3-I GAG-POL POLYPROTEIN |
| Paelopatides47558 | |
| Paelopatides47559 | OXIDASE/PEROXIDASE |
| Paelopatides47560 | TUBULIN POLYGLUTAMYLASE |
| Paelopatides47561 | REVERSE TRANSCRIPTASES |
| Paelopatides47563 | CELL SURFACE GLYCOPROTEIN MUC18-RELATED |
| Paelopatides47564 | |
| Paelopatides47565 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
| Paelopatides47566 | |
| Paelopatides47567 | RETROTRANSPOSON |
| Paelopatides47568 | RETROTRANSPOSON |
| Paelopatides47569 | |
| Paelopatides47570 | - |
| Paelopatides47571 | |
| Paelopatides47572 | |
| Paelopatides47573 | - |
| Paelopatides47574 | - |
| Paelopatides47575 | - |
| Paelopatides47576 | - |
| Paelopatides47577 | PROTEIN CBG26694 |
| Paelopatides47579 | ACTIN |
| Paelopatides47581 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Paelopatides47582 | KINESIN-RELATED |
| Paelopatides47583 | |
| Paelopatides47584 | INTRAFLAGELLAR TRANSPORT PROTEIN 20 HOMOLOG |
| Paelopatides47585 | |
| Paelopatides47586 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
| Paelopatides47587 | |
| Paelopatides47588 | |
| Paelopatides47589 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides47590 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
| Paelopatides47591 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides47592 | ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING |
| Paelopatides47593 | TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT BIT61-RELATED |
| Paelopatides47594 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides47595 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides47596 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides47597 | PDF RECEPTOR-LIKE PROTEIN-RELATED |
| Paelopatides47598 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
| Paelopatides47599 | |
| Paelopatides47600 | 6-PHOSPHOGLUCONATE DEHYDROGENASE |
| Paelopatides47601 | |
| Paelopatides47602 | WD REPEAT AND HMG-BOX DNA BINDING PROTEIN |
| Paelopatides47603 | WD REPEAT AND HMG-BOX DNA BINDING PROTEIN |
| Paelopatides47604 | WITH PUTATIVE URIDYL PYROPHOSPHORYLASE-RELATED |
| Paelopatides47605 | B-CELL TRANSLOCATION GENE |
