About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40%57,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides47658TRANSPOSABLE ELEMENT-RELATED
Paelopatides47659NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED
Paelopatides47660ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides47661
Paelopatides47662TRANSLATION FACTOR
Paelopatides47663
Paelopatides47664GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE
Paelopatides47665WASH COMPLEX SUBUNIT 5
Paelopatides47666WASH COMPLEX SUBUNIT 5
Paelopatides47667PROTEIN CBG26694
Paelopatides47668E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER
Paelopatides47669
Paelopatides47670DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides47671IGGFC_BINDING DOMAIN-CONTAINING PROTEIN
Paelopatides47672FI04643P-RELATED
Paelopatides47673RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides47674
Paelopatides47675TYROSINE-PROTEIN KINASE
Paelopatides47676BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED
Paelopatides47677FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides47678TYROSINE-PROTEIN KINASE
Paelopatides47679
Paelopatides47680REVERSE TRANSCRIPTASES
Paelopatides47681TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides47682ZINC FINGER PROTEIN ZIC AND GLI
Paelopatides47684
Paelopatides47685PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides47686SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides47687CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides47688ENZYMATIC POLYPROTEIN-RELATED
Paelopatides47689
Paelopatides47690INTERLEUKIN-1 RECEPTOR FAMILY MEMBER
Paelopatides47691IMPORTIN-7, 8, 11
Paelopatides47692RAB FAMILY
Paelopatides47693PROTEIN CBG26694
Paelopatides47694ZINC FINGER PROTEIN
Paelopatides47695REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides47698
Paelopatides47699
Paelopatides47700
Paelopatides47701ANKYRIN REPEAT DOMAIN 36-RELATED
Paelopatides47702ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN
Paelopatides47703
Paelopatides47704PF6
Paelopatides47705
Paelopatides47706
Paelopatides47707REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides47708
Paelopatides47709REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides47710PROTEIN CBG26694
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