About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_17779-0.1
Bpl_scaf_17780-0.2TRANSCRIPTION ELONGATION FACTOR SPT6
Bpl_scaf_17782-0.11NEPHRIN
Bpl_scaf_17782-0.9
Bpl_scaf_17782-1.15
Bpl_scaf_17782-1.16
Bpl_scaf_17782-1.17CONTACTIN 5
Bpl_scaf_17782-1.18
Bpl_scaf_17782-2.0
Bpl_scaf_17782-2.16
Bpl_scaf_17782-2.17CONTACTIN 5
Bpl_scaf_17782-2.18CONTACTIN 5
Bpl_scaf_17782-2.2
Bpl_scaf_17782-2.3
Bpl_scaf_17782-2.7
Bpl_scaf_17786-0.0
Bpl_scaf_17793-0.0
Bpl_scaf_17794-0.10EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Bpl_scaf_17794-0.6THAP DOMAIN-CONTAINING
Bpl_scaf_17795-0.3BONUS, ISOFORM C-RELATED
Bpl_scaf_17795-2.12PEPTIDASE
Bpl_scaf_17795-2.14
Bpl_scaf_17795-2.18SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Bpl_scaf_17795-2.8BONUS, ISOFORM C-RELATED
Bpl_scaf_178-0.1UNCHARACTERIZED
Bpl_scaf_1780-0.3TRANSCRIPTION FACTOR LBX
Bpl_scaf_1780-1.0
Bpl_scaf_1780-1.3RING ZINC FINGER PROTEIN
Bpl_scaf_1780-1.4RING ZINC FINGER PROTEIN
Bpl_scaf_17805-0.5ETHANOLAMINEPHOSPHOTRANSFERASE
Bpl_scaf_17805-1.0DRAB11-RELATED
Bpl_scaf_17805-2.10-
Bpl_scaf_17805-2.11
Bpl_scaf_17805-2.15SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN
Bpl_scaf_17805-2.16SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN
Bpl_scaf_17805-2.9SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN
Bpl_scaf_1785-0.2
Bpl_scaf_1785-0.3DUAL SPECIFICITY PROTEIN PHOSPHATASE
Bpl_scaf_1785-1.19SLIT HOMOLOG
Bpl_scaf_1785-1.20PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
Bpl_scaf_1785-1.27AGAP008170-PA
Bpl_scaf_1785-1.28PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
Bpl_scaf_17856-0.14
Bpl_scaf_17856-0.15RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_17856-0.17
Bpl_scaf_17856-1.17
Bpl_scaf_17856-1.19RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_17856-1.23HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Bpl_scaf_17856-1.28
Bpl_scaf_17856-1.29
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