About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_17533-4.28SERINE HYDROXYMETHYLTRANSFERASE
Bpl_scaf_17533-4.6UNCHARACTERIZED
Bpl_scaf_17533-5.20EF HAND DOMAIN FAMILY A1,A2-RELATED
Bpl_scaf_17533-5.38LYSOSOMAL ACID LIPASE-RELATED
Bpl_scaf_17533-5.49MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB
Bpl_scaf_17533-5.5
Bpl_scaf_17533-5.50LYSOSOMAL ACID LIPASE-RELATED
Bpl_scaf_17533-5.52PROLIFERATING CELL NUCLEAR ANTIGEN
Bpl_scaf_17533-5.53HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED
Bpl_scaf_17533-5.54HISTONE H2A
Bpl_scaf_17533-5.55DNA-DAMAGE-INDUCIBLE TRANSCRIPT 4 PROTEIN DDIT4
Bpl_scaf_17553-0.12
Bpl_scaf_17553-0.13RPA-RELATED PROTEIN RADX
Bpl_scaf_17564-0.0
Bpl_scaf_17564-0.1
Bpl_scaf_17564-0.7
Bpl_scaf_17573-0.13
Bpl_scaf_17573-0.14
Bpl_scaf_17573-0.17NEPHRIN
Bpl_scaf_17574-0.21
Bpl_scaf_17574-0.27
Bpl_scaf_17574-0.28ZGC:195170
Bpl_scaf_17574-0.29
Bpl_scaf_17574-0.3
Bpl_scaf_17582-0.0
Bpl_scaf_17582-0.3DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Bpl_scaf_1759-0.0
Bpl_scaf_1759-0.12LITHOSTATHINE
Bpl_scaf_1759-0.3STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Bpl_scaf_1759-1.0
Bpl_scaf_17595-0.0
Bpl_scaf_17605-0.1
Bpl_scaf_17605-0.2G-PROTEIN COUPLED RECEPTOR
Bpl_scaf_17619-0.7
Bpl_scaf_17627-0.17DNA2/NAM7 HELICASE FAMILY MEMBER
Bpl_scaf_17627-0.18FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Bpl_scaf_17637-0.14
Bpl_scaf_17637-0.15PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Bpl_scaf_17637-0.16AGAP001331-PA-RELATED
Bpl_scaf_17637-0.18
Bpl_scaf_17637-0.3
Bpl_scaf_17641-0.1HELIX LOOP HELIX PROTEIN 21-RELATED
Bpl_scaf_17641-0.21HELIX LOOP HELIX PROTEIN 21-RELATED
Bpl_scaf_17641-0.4GTPASE, IMAP FAMILY MEMBER-RELATED
Bpl_scaf_17641-0.5
Bpl_scaf_17641-1.16SOLUTE CARRIER FAMILY 17
Bpl_scaf_17641-1.9SOLUTE CARRIER FAMILY 17
Bpl_scaf_17641-11.0
Bpl_scaf_17641-12.10ATROPHIN-RELATED
Bpl_scaf_17641-13.4ZINC FINGER PROTEIN 200
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