About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_1722-0.2
Bpl_scaf_1722-0.9
Bpl_scaf_17223-0.5E3 UBIQUITIN-PROTEIN LIGASE RNF165
Bpl_scaf_17223-0.6GLYCOSYL TRANSFERASE-RELATED
Bpl_scaf_17223-1.11BETA-HEXOSAMINIDASE
Bpl_scaf_17223-1.7MOLTING PROTEIN MLT-4
Bpl_scaf_17223-2.0
Bpl_scaf_17223-2.10BETA-HEXOSAMINIDASE
Bpl_scaf_17223-2.18CXC DOMAIN-CONTAINING PROTEIN-RELATED
Bpl_scaf_17223-2.9
Bpl_scaf_17223-3.2
Bpl_scaf_17223-3.3
Bpl_scaf_17223-4.3
Bpl_scaf_17224-0.4INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
Bpl_scaf_17233-0.0
Bpl_scaf_17233-0.1
Bpl_scaf_17239-0.0
Bpl_scaf_17239-0.4CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
Bpl_scaf_17271-0.2TOLL-LIKE RECEPTOR
Bpl_scaf_17282-0.0UNNAMED PRODUCT
Bpl_scaf_1730-0.12
Bpl_scaf_1730-0.13
Bpl_scaf_1730-0.3
Bpl_scaf_1730-0.8
Bpl_scaf_17386-0.4
Bpl_scaf_17386-0.9MAMMALIAN EPENDYMIN-RELATED PROTEIN 1
Bpl_scaf_17387-1.13CEREBELLIN-RELATED
Bpl_scaf_17387-2.5SOLUTE CARRIER FAMILY 22 MEMBER
Bpl_scaf_17387-3.13CEREBELLIN-RELATED
Bpl_scaf_17387-3.2NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Bpl_scaf_17387-4.19CEREBELLIN-RELATED
Bpl_scaf_17387-4.24CEREBELLIN-RELATED
Bpl_scaf_17387-4.30RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_17387-4.32
Bpl_scaf_17387-4.33CEREBELLIN-RELATED
Bpl_scaf_17387-4.53
Bpl_scaf_17387-4.54CEREBELLIN-RELATED
Bpl_scaf_17387-4.55CEREBELLIN-RELATED
Bpl_scaf_1739-0.2INNEXIN
Bpl_scaf_1739-0.56INNEXIN
Bpl_scaf_1739-0.57INNEXIN
Bpl_scaf_17392-0.10SEC14 DOMAIN AND SPECTRIN REPEAT-CONTAINING PROTEIN 1
Bpl_scaf_17392-0.8RHO GUANINE EXCHANGE FACTOR-RELATED
Bpl_scaf_17407-1.10SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT
Bpl_scaf_17407-1.24BCL2-ASSOCIATED ATHANOGENE
Bpl_scaf_17407-1.6NUCLEOPORIN-LIKE PROTEIN 2
Bpl_scaf_17407-1.8CADHERIN-87A
Bpl_scaf_17407-2.0
Bpl_scaf_17407-4.6
Bpl_scaf_17407-4.7CRUMBS FAMILY MEMBER
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