Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_17051-3.4 | PUTATIVE-RELATED |
| Bpl_scaf_17051-3.7 | |
| Bpl_scaf_17051-3.8 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_17051-4.12 | ZINC FINGER MYND DOMAIN CONTAINING PROTEIN 10 |
| Bpl_scaf_17051-4.16 | |
| Bpl_scaf_17051-4.17 | |
| Bpl_scaf_17051-5.14 | RASSF |
| Bpl_scaf_17051-5.5 | MOLTING PROTEIN MLT-4 |
| Bpl_scaf_17051-5.6 | STRICTOSIDINE SYNTHASE-RELATED |
| Bpl_scaf_17051-6.13 | ADP-RIBOSYLGLYCOHYDROLASE |
| Bpl_scaf_17051-6.27 | |
| Bpl_scaf_17051-6.6 | ANKYRIN REPEAT AND SOCS BOX PROTEIN 17 |
| Bpl_scaf_17051-6.8 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
| Bpl_scaf_17051-7.0 | |
| Bpl_scaf_17051-8.13 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| Bpl_scaf_17051-8.15 | GLUTAMATE RECEPTOR-INTERACTING PROTEIN GRIP |
| Bpl_scaf_17051-8.8 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_17051-9.0 | |
| Bpl_scaf_17051-9.22 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_17051-9.4 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
| Bpl_scaf_17052-0.1 | |
| Bpl_scaf_17052-0.12 | |
| Bpl_scaf_17052-0.2 | |
| Bpl_scaf_17052-1.7 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Bpl_scaf_17062-0.5 | |
| Bpl_scaf_17062-1.14 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Bpl_scaf_17062-1.15 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Bpl_scaf_17067-0.0 | |
| Bpl_scaf_17067-1.0 | FTP DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_17067-1.11 | |
| Bpl_scaf_17067-1.12 | |
| Bpl_scaf_17067-1.5 | UNCHARACTERIZED |
| Bpl_scaf_17067-1.8 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_17067-1.9 | PHYTANOYL-COA DIOXYGENASE-RELATED-RELATED |
| Bpl_scaf_17076-0.3 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_17076-0.9 | ARYLSULFATASE |
| Bpl_scaf_17076-1.2 | POTE ANKYRIN DOMAIN |
| Bpl_scaf_17076-1.4 | METAL TRANSPORTER CNNM |
| Bpl_scaf_17076-1.7 | TYROSINASE FAMILY MEMBER |
| Bpl_scaf_17076-1.8 | CRYPTOCHROME |
| Bpl_scaf_17077-0.0 | |
| Bpl_scaf_17078-0.0 | |
| Bpl_scaf_17080-0.3 | PHD FINGER PROTEIN |
| Bpl_scaf_17080-1.22 | ENDOSULFINE |
| Bpl_scaf_17080-1.6 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Bpl_scaf_17080-1.7 | DEFECTIVE PROBOSCIS EXTENSION RESPONSE DPR -RELATED |
| Bpl_scaf_17080-1.9 | SORTING NEXIN |
| Bpl_scaf_17081-0.0 | |
| Bpl_scaf_17081-1.11 | |
| Bpl_scaf_17081-1.6 |
