Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_16961-4.3 | |
| Bpl_scaf_16961-4.6 | |
| Bpl_scaf_16961-5.5 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD |
| Bpl_scaf_16961-6.6 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| Bpl_scaf_16961-7.3 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
| Bpl_scaf_16961-7.5 | METABOTROPIC GLUTAMATE RECEPTOR |
| Bpl_scaf_16961-8.0 | METABOTROPIC GLUTAMATE RECEPTOR |
| Bpl_scaf_16961-9.2 | METABOTROPIC GLUTAMATE RECEPTOR |
| Bpl_scaf_16961-9.3 | METABOTROPIC GLUTAMATE RECEPTOR |
| Bpl_scaf_16982-0.21 | |
| Bpl_scaf_16982-0.22 | DETERIN |
| Bpl_scaf_16982-0.24 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_16982-0.25 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_16982-0.32 | |
| Bpl_scaf_1699-0.0 | |
| Bpl_scaf_1699-0.11 | |
| Bpl_scaf_1699-0.12 | |
| Bpl_scaf_1699-0.17 | |
| Bpl_scaf_1699-0.3 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| Bpl_scaf_1699-0.4 | |
| Bpl_scaf_16998-0.16 | SI:CH211-67E16.11 |
| Bpl_scaf_16998-0.19 | TRANSMEMBRANE PROTEIN 19 |
| Bpl_scaf_16998-0.9 | INTEGRIN ALPHA |
| Bpl_scaf_17010-0.16 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_17010-0.25 | CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED |
| Bpl_scaf_17010-0.26 | CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED |
| Bpl_scaf_17010-0.28 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_17010-0.45 | |
| Bpl_scaf_17025-0.10 | |
| Bpl_scaf_17025-0.22 | |
| Bpl_scaf_17025-0.23 | |
| Bpl_scaf_17025-0.24 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
| Bpl_scaf_17025-0.26 | |
| Bpl_scaf_17025-0.27 | |
| Bpl_scaf_17025-0.28 | |
| Bpl_scaf_17025-0.29 | |
| Bpl_scaf_17025-0.30 | |
| Bpl_scaf_17035-0.6 | EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN |
| Bpl_scaf_17035-0.7 | |
| Bpl_scaf_17035-0.8 | TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 |
| Bpl_scaf_17035-1.10 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| Bpl_scaf_17035-1.11 | INTEGRATOR COMPLEX SUBUNIT 2 |
| Bpl_scaf_17035-1.9 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 |
| Bpl_scaf_17041-0.12 | |
| Bpl_scaf_17041-0.13 | |
| Bpl_scaf_17041-0.5 | |
| Bpl_scaf_17041-1.5 | |
| Bpl_scaf_17048-0.0 | |
| Bpl_scaf_17050-0.3 | TRANSCRIPTION INTERMEDIARY FACTOR |
| Bpl_scaf_17050-1.4 |
