About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_17081-2.11RIBOSOMAL PROTEIN L39E
Bpl_scaf_17081-2.13CYTOSOLIC CARBOXYPEPTIDASE
Bpl_scaf_17081-3.7TBC1 DOMAIN FAMILY MEMBER 7
Bpl_scaf_17081-3.8
Bpl_scaf_17081-3.9RFWD3 PROTEIN
Bpl_scaf_17081-4.1
Bpl_scaf_17081-4.4NCK-ASSOCIATED PROTEIN 1
Bpl_scaf_17081-4.5NCK-ASSOCIATED PROTEIN 1
Bpl_scaf_17081-5.2FMRFAMIDE RECEPTOR-RELATED
Bpl_scaf_17081-5.4SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
Bpl_scaf_17081-7.2B-BOX DOMAIN CONTAINING
Bpl_scaf_17081-7.7NUCLEAR HORMONE RECEPTOR HR3-RELATED
Bpl_scaf_17081-8.1BONUS, ISOFORM C-RELATED
Bpl_scaf_17081-8.13
Bpl_scaf_17081-8.27CEREBELLIN-RELATED
Bpl_scaf_17081-8.28CEREBELLIN-RELATED
Bpl_scaf_17081-8.3BONUS, ISOFORM C-RELATED
Bpl_scaf_17089-0.21POLYCYSTIN FAMILY MEMBER
Bpl_scaf_17089-1.14
Bpl_scaf_17089-1.39POLYCYSTIN-1
Bpl_scaf_17089-1.41POLYCYSTIN FAMILY MEMBER
Bpl_scaf_17089-1.42POLYCYSTIN-1
Bpl_scaf_17089-1.44
Bpl_scaf_17089-1.45POLYCYSTIN FAMILY MEMBER
Bpl_scaf_17099-0.0
Bpl_scaf_17102-0.7APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Bpl_scaf_17102-1.2DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49
Bpl_scaf_17102-1.3ZINC FINGER AND BTB DOMAIN-CONTAINING
Bpl_scaf_17102-2.3G-PROTEIN COUPLED RECEPTOR
Bpl_scaf_17102-2.8G-PROTEIN COUPLED RECEPTOR
Bpl_scaf_17109-0.1COLLAGEN ALPHA
Bpl_scaf_17111-0.0
Bpl_scaf_17112-0.3
Bpl_scaf_17115-0.8NADH DEHYDROGENASE
Bpl_scaf_17115-1.11
Bpl_scaf_17115-1.4ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN
Bpl_scaf_17115-2.16
Bpl_scaf_17115-2.17
Bpl_scaf_17115-2.22KRUEPPEL-LIKE TRANSCRIPTION FACTOR
Bpl_scaf_17115-2.23
Bpl_scaf_17115-2.24SERUM RESPONSE FACTOR HOMOLOG
Bpl_scaf_17116-0.0ANNEXIN
Bpl_scaf_17125-0.0PROTEIN CBG23764
Bpl_scaf_17125-0.2INHIBITOR OF APOPTOSIS
Bpl_scaf_17125-1.12LD24721P
Bpl_scaf_17125-1.13
Bpl_scaf_17125-1.14TPR REPEAT CONTAINING PROTEIN
Bpl_scaf_17125-1.6EXPRESSED PROTEIN
Bpl_scaf_17125-1.7EXPRESSED PROTEIN
Bpl_scaf_17125-2.0PLASMINOGEN-RELATED
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