Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_16621-12.12 | RWD DOMAIN-CONTAINING PROTEIN 3 |
| Bpl_scaf_16621-12.5 | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE |
| Bpl_scaf_16621-12.9 | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING |
| Bpl_scaf_16621-15.0 | 3',5'-CYCLIC-AMP PHOSPHODIESTERASE-RELATED |
| Bpl_scaf_16621-16.10 | UNCHARACTERIZED |
| Bpl_scaf_16621-16.12 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| Bpl_scaf_16621-16.13 | HOOK PROTEINS |
| Bpl_scaf_16621-16.6 | 3',5'-CYCLIC-AMP PHOSPHODIESTERASE-RELATED |
| Bpl_scaf_16621-17.1 | CABIT DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_16621-17.12 | CYTOCHROME C OXIDASE SUBUNIT 6C |
| Bpl_scaf_16621-17.13 | |
| Bpl_scaf_16621-17.16 | |
| Bpl_scaf_16621-19.11 | DEATH DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_16621-19.19 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
| Bpl_scaf_16621-19.20 | |
| Bpl_scaf_16621-19.21 | |
| Bpl_scaf_16621-2.3 | EYES ABSENT |
| Bpl_scaf_16621-20.11 | VITELLOGENIN-RELATED |
| Bpl_scaf_16621-20.20 | INTEGRAL MEMBRANE PROTEIN GPR177 |
| Bpl_scaf_16621-20.34 | SYNAPTONEMAL COMPLEX CENTRAL ELEMENT PROTEIN 2 |
| Bpl_scaf_16621-20.36 | CRSP70 |
| Bpl_scaf_16621-20.37 | NUCLEOTIDE KINASE |
| Bpl_scaf_16621-20.39 | LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED |
| Bpl_scaf_16621-20.40 | TAL1 SCL INTERRUPTING LOCUS |
| Bpl_scaf_16621-3.10 | FER-1-LIKE |
| Bpl_scaf_16621-3.11 | FER-1-LIKE |
| Bpl_scaf_16621-3.12 | FER-1-LIKE |
| Bpl_scaf_16621-3.13 | FER-1-LIKE |
| Bpl_scaf_16621-5.15 | MITOTIC INTERACTOR AND SUBSTRATE OF PLK1 MISP FAMILY MEMBER |
| Bpl_scaf_16621-5.17 | KICSTOR COMPLEX PROTEIN SZT2 |
| Bpl_scaf_16621-5.18 | KICSTOR COMPLEX PROTEIN SZT2 |
| Bpl_scaf_16621-5.19 | KICSTOR COMPLEX PROTEIN SZT2 |
| Bpl_scaf_16621-5.20 | KICSTOR COMPLEX PROTEIN SZT2 |
| Bpl_scaf_16621-5.21 | KICSTOR COMPLEX PROTEIN SZT2 |
| Bpl_scaf_16621-5.22 | KICSTOR COMPLEX PROTEIN SZT2 |
| Bpl_scaf_16621-5.23 | KICSTOR COMPLEX PROTEIN SZT2 |
| Bpl_scaf_16621-6.4 | |
| Bpl_scaf_16621-7.2 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| Bpl_scaf_16621-8.7 | FIVE-SPAN TRANSMEMBRANE PROTEIN M83 |
| Bpl_scaf_16621-8.9 | TRANSMEMBRANE PROTEIN CCDC163 |
| Bpl_scaf_16621-9.10 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| Bpl_scaf_16621-9.11 | NON-SMC ELEMENT 1-RELATED |
| Bpl_scaf_16621-9.4 | RNA HELICASE |
| Bpl_scaf_16626-0.3 | LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL |
| Bpl_scaf_16635-0.2 | UNNAMED PRODUCT |
| Bpl_scaf_16635-0.4 | UNNAMED PRODUCT |
| Bpl_scaf_16646-0.3 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_16646-0.6 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Bpl_scaf_16646-1.15 | ECSIT EVOLUTIONARILY CONSERVED SIGNALING INTERMEDIATE IN TOLL PATHWAYS |
| Bpl_scaf_16646-1.4 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED |
