Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_16474-1.6 | UNNAMED PRODUCT |
| Bpl_scaf_16474-1.9 | |
| Bpl_scaf_16474-2.10 | WD-40 REPEAT PROTEIN |
| Bpl_scaf_16474-2.9 | NUCLEOLAR COMPLEX PROTEIN 4 |
| Bpl_scaf_16475-0.0 | KREMEN PROTEIN |
| Bpl_scaf_16475-0.9 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_16475-1.1 | |
| Bpl_scaf_16475-1.5 | - |
| Bpl_scaf_16475-1.6 | PROTEIN PHOSPATASE 3 REGULATORY SUBUNIT B ALPHA ISOFORM TYPE 1 |
| Bpl_scaf_16475-2.11 | 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE-RELATED |
| Bpl_scaf_16475-3.3 | |
| Bpl_scaf_16475-4.18 | |
| Bpl_scaf_16475-4.2 | |
| Bpl_scaf_16475-5.2 | DESMOGLEIN FAMILY MEMBER |
| Bpl_scaf_16475-6.0 | SIMILAR TO RIKEN CDNA E130308A19 |
| Bpl_scaf_16475-6.7 | SIMILAR TO RIKEN CDNA E130308A19 |
| Bpl_scaf_16475-9.14 | |
| Bpl_scaf_16475-9.2 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_16479-2.0 | |
| Bpl_scaf_16488-0.1 | |
| Bpl_scaf_16489-0.6 | DESMOGLEIN FAMILY MEMBER |
| Bpl_scaf_16494-0.11 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| Bpl_scaf_16494-0.15 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| Bpl_scaf_16494-2.6 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
| Bpl_scaf_16498-0.0 | |
| Bpl_scaf_16498-1.4 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| Bpl_scaf_16498-2.10 | CHITIN-BINDING TYPE-4 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_16498-2.16 | CRUMBS FAMILY MEMBER |
| Bpl_scaf_16498-2.19 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_16498-2.20 | SLR1189 PROTEIN |
| Bpl_scaf_16498-2.34 | CHITIN-BINDING TYPE-4 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_1655-0.11 | PHD FINGER PROTEIN 20-RELATED |
| Bpl_scaf_1655-0.29 | UNCHARACTERIZED |
| Bpl_scaf_1655-0.7 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_1655-0.9 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Bpl_scaf_16590-0.4 | |
| Bpl_scaf_16590-1.10 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4 |
| Bpl_scaf_16590-1.11 | POLY ADP-RIBOSE GLYCOHYDROLASE |
| Bpl_scaf_16590-1.20 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED |
| Bpl_scaf_16590-1.5 | AMMECR1 HOMOLOG |
| Bpl_scaf_16590-1.6 | WD REPEAT-CONTAINING PROTEIN 53 |
| Bpl_scaf_16590-2.14 | UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE |
| Bpl_scaf_16590-2.7 | YES-ASSOCIATED PROTEIN YAP1 FAMILY MEMBER |
| Bpl_scaf_16590-2.9 | YES-ASSOCIATED PROTEIN YAP1 FAMILY MEMBER |
| Bpl_scaf_16590-3.3 | AAA-FAMILY ATPASE |
| Bpl_scaf_16590-4.12 | |
| Bpl_scaf_16590-4.13 | STIMULATOR OF INTERFERON GENES PROTEIN |
| Bpl_scaf_16590-4.4 | SOX TRANSCRIPTION FACTOR |
| Bpl_scaf_16594-0.2 | |
| Bpl_scaf_16597-0.0 | RETICULOCALBIN |
