About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_16054-2.22HISTONE H3
Bpl_scaf_16054-2.23PROTEIN CCSMST1
Bpl_scaf_16054-3.7
Bpl_scaf_16054-3.8PROKARYOTIC DNA TOPOISOMERASE
Bpl_scaf_16054-4.14
Bpl_scaf_16054-4.17RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_16054-4.9
Bpl_scaf_1610-0.1
Bpl_scaf_1610-0.4PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_16111-0.3SCAVENGER RECEPTOR CLASS F
Bpl_scaf_16111-0.7
Bpl_scaf_16120-0.0
Bpl_scaf_16134-0.1
Bpl_scaf_16143-0.11LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR
Bpl_scaf_16143-0.7FCH AND DOUBLE SH3 DOMAINS PROTEIN
Bpl_scaf_16143-1.10LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR
Bpl_scaf_16143-1.14
Bpl_scaf_16143-1.15
Bpl_scaf_16143-10.5IONOTROPIC GLUTAMATE RECEPTOR
Bpl_scaf_16143-10.6
Bpl_scaf_16143-10.7IONOTROPIC GLUTAMATE RECEPTOR
Bpl_scaf_16143-12.13
Bpl_scaf_16143-12.4UNCHARACTERIZED
Bpl_scaf_16143-12.6
Bpl_scaf_16143-12.8IONOTROPIC GLUTAMATE RECEPTOR
Bpl_scaf_16143-13.2
Bpl_scaf_16143-14.7IONOTROPIC GLUTAMATE RECEPTOR
Bpl_scaf_16143-15.1NEUROPEPTIDE Y RECEPTOR
Bpl_scaf_16143-15.9G-PROTEIN COUPLED RECEPTOR
Bpl_scaf_16143-17.2ACID AMIDASE
Bpl_scaf_16143-18.1
Bpl_scaf_16143-18.4PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
Bpl_scaf_16143-19.6CADHERIN-87A
Bpl_scaf_16143-19.7CADHERIN-87A
Bpl_scaf_16143-2.2
Bpl_scaf_16143-20.6CADHERIN-87A
Bpl_scaf_16143-21.2
Bpl_scaf_16143-21.8LEUKOTRIENE A-4 HYDROLASE
Bpl_scaf_16143-21.9NUCLEOPORIN P54
Bpl_scaf_16143-3.6
Bpl_scaf_16143-4.1ADIPOR/PROGESTIN RECEPTOR-RELATED
Bpl_scaf_16143-4.3YIPPEE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_16143-5.11ATP-DEPENDENT RNA HELICASE DBP3
Bpl_scaf_16143-5.12
Bpl_scaf_16143-5.15SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
Bpl_scaf_16143-5.5
Bpl_scaf_16143-6.10CENTROSOMAL PROTEIN OF 44 KDA
Bpl_scaf_16143-6.11OVARIAN CARCINOMA IMMUNOREACTIVE ANTIGEN
Bpl_scaf_16143-7.1UNCHARACTERIZED
Bpl_scaf_16143-7.15
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