Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_17641-14.3 | ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_17641-2.15 | |
| Bpl_scaf_17641-2.7 | TRANSMEMBRANE PROTEIN 180 |
| Bpl_scaf_17641-2.8 | SOLUTE CARRIER FAMILY 17 |
| Bpl_scaf_17641-3.8 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| Bpl_scaf_17641-3.9 | TUMOR PROTEIN P63-REGULATED GENE 1-LIKE PROTEIN |
| Bpl_scaf_17641-4.6 | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7 |
| Bpl_scaf_17641-6.11 | |
| Bpl_scaf_17641-6.14 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Bpl_scaf_17641-6.6 | GLUTATHIONE S-TRANSFERASE |
| Bpl_scaf_17641-9.4 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_17646-0.14 | |
| Bpl_scaf_17646-0.19 | RHO FAMILY GTPASE |
| Bpl_scaf_17646-0.23 | DEATH DOMAIN-CONTAINING PROTEIN CRADD |
| Bpl_scaf_17646-0.26 | DEATH DOMAIN-CONTAINING PROTEIN CRADD |
| Bpl_scaf_17646-0.27 | |
| Bpl_scaf_17646-0.28 | |
| Bpl_scaf_17655-0.7 | TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER |
| Bpl_scaf_17663-0.14 | |
| Bpl_scaf_17663-0.2 | G-PROTEIN COUPLED RECEPTOR 158-RELATED |
| Bpl_scaf_17663-0.23 | G-PROTEIN COUPLED RECEPTOR 158-RELATED |
| Bpl_scaf_17663-0.24 | G-PROTEIN COUPLED RECEPTOR 158-RELATED |
| Bpl_scaf_17663-0.6 | |
| Bpl_scaf_17675-0.6 | |
| Bpl_scaf_17675-0.7 | KINESIN-LIKE PROTEIN KIF11 |
| Bpl_scaf_17675-0.8 | TRANSCRIPTION FACTOR COE FAMILY MEMBER |
| Bpl_scaf_17683-0.10 | ANKYRIN REPEAT AND DEATH DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_17683-1.5 | |
| Bpl_scaf_17683-1.7 | |
| Bpl_scaf_1769-1.2 | |
| Bpl_scaf_1769-1.3 | |
| Bpl_scaf_1769-1.7 | PROTEIN STAR |
| Bpl_scaf_17699-0.0 | |
| Bpl_scaf_17699-0.1 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Bpl_scaf_17699-0.9 | |
| Bpl_scaf_17699-1.0 | |
| Bpl_scaf_17699-1.13 | |
| Bpl_scaf_17699-1.9 | |
| Bpl_scaf_17704-0.2 | |
| Bpl_scaf_17705-1.5 | |
| Bpl_scaf_17707-0.0 | GLYCOSYLTRANSFERASE 14 FAMILY MEMBER |
| Bpl_scaf_17714-1.19 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Bpl_scaf_17714-1.20 | ADHESION G PROTEIN-COUPLED RECEPTOR G7 |
| Bpl_scaf_17714-1.21 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_17714-1.24 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Bpl_scaf_17714-10.5 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| Bpl_scaf_17714-11.2 | SERINE/ARGININE RICH SPLICING FACTOR |
| Bpl_scaf_17714-13.7 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| Bpl_scaf_17714-14.6 | RUN AND SH3 DOMAIN CONTAINING |
| Bpl_scaf_17714-15.1 |
