Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_17743-0.4 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_17743-1.17 | ADENYLATE CYCLASE TYPE 1 |
| Bpl_scaf_17743-1.3 | |
| Bpl_scaf_17743-1.40 | |
| Bpl_scaf_17743-1.41 | NG5 |
| Bpl_scaf_17743-1.43 | |
| Bpl_scaf_17743-1.44 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_17754-0.16 | PUTATIVE-RELATED |
| Bpl_scaf_17754-0.21 | |
| Bpl_scaf_17754-1.1 | |
| Bpl_scaf_17754-1.16 | |
| Bpl_scaf_17754-1.18 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_17758-0.0 | |
| Bpl_scaf_17758-0.1 | |
| Bpl_scaf_17758-0.3 | RETROTRANSPOSON |
| Bpl_scaf_17758-1.3 | FTP DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_1776-0.0 | HISTONE H2B |
| Bpl_scaf_17761-0.0 | |
| Bpl_scaf_17773-0.13 | SI:CH211-108C17.2-RELATED-RELATED |
| Bpl_scaf_17773-1.14 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
| Bpl_scaf_17773-2.16 | |
| Bpl_scaf_17773-2.17 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
| Bpl_scaf_17773-2.18 | |
| Bpl_scaf_17773-2.9 | |
| Bpl_scaf_17778-1.17 | DYNEIN HEAVY CHAIN FAMILY PROTEIN |
| Bpl_scaf_17778-1.37 | ASPARTATE BETA-HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2 |
| Bpl_scaf_17778-1.40 | COFILIN-RELATED |
| Bpl_scaf_17778-2.10 | UNCHARACTERIZED |
| Bpl_scaf_17778-2.16 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
| Bpl_scaf_17778-2.17 | |
| Bpl_scaf_17778-3.5 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
| Bpl_scaf_17778-3.6 | MICRORNA PROCESSOR COMPLEX SUBUNIT DGCR8 |
| Bpl_scaf_17778-4.13 | S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE |
| Bpl_scaf_17778-4.14 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
| Bpl_scaf_17778-4.15 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
| Bpl_scaf_17778-5.12 | TRICHOPLEIN KERATIN FILAMENT-BINDING PROTEIN FAMILY MEMBER |
| Bpl_scaf_17778-5.13 | TRICHOPLEIN KERATIN FILAMENT-BINDING PROTEIN FAMILY MEMBER |
| Bpl_scaf_17778-5.14 | CARBONIC ANHYDRASE |
| Bpl_scaf_17778-5.21 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL |
| Bpl_scaf_17778-6.8 | GAMETOGENETIN-BINDING PROTEIN 2 |
| Bpl_scaf_17778-7.1 | |
| Bpl_scaf_17778-7.15 | |
| Bpl_scaf_17778-7.7 | ZINC FINGER AND BTB DOMAIN-CONTAINING |
| Bpl_scaf_17778-8.0 | |
| Bpl_scaf_17778-8.7 | |
| Bpl_scaf_17778-9.21 | THAP DOMAIN PROTEIN |
| Bpl_scaf_17778-9.22 | |
| Bpl_scaf_17778-9.28 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| Bpl_scaf_17778-9.29 | |
| Bpl_scaf_17778-9.7 | GLUTAMINASE |
