About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_17407-5.25POLYCYSTIN FAMILY MEMBER
Bpl_scaf_17407-5.26REVERSE TRANSCRIPTASES
Bpl_scaf_17407-5.27
Bpl_scaf_17407-5.28POLYCYSTIN FAMILY MEMBER
Bpl_scaf_17407-5.29
Bpl_scaf_17409-0.10
Bpl_scaf_17433-0.7
Bpl_scaf_17445-0.12
Bpl_scaf_17445-0.13
Bpl_scaf_17453-0.6TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
Bpl_scaf_17464-0.15
Bpl_scaf_17464-0.17
Bpl_scaf_17464-0.18
Bpl_scaf_17465-1.10DYNEIN INTERMEDIATE CHAIN
Bpl_scaf_17465-1.9ATAXIN-7-LIKE PROTEIN 3
Bpl_scaf_17465-2.7ZINC FINGER PROTEIN
Bpl_scaf_17465-2.8COLLAGEN ALPHA
Bpl_scaf_17465-3.3BETA-TUBULIN COFACTOR D
Bpl_scaf_17465-4.13RHO FAMILY GTPASE
Bpl_scaf_17465-4.14BETA-TUBULIN COFACTOR D
Bpl_scaf_17465-5.5CARBOHYDRATE BINDING DOMAIN CONTAINING PROTEIN
Bpl_scaf_17466-0.3
Bpl_scaf_17466-0.4
Bpl_scaf_17475-0.3DEOXYCYTIDYLATE DEAMINASE-RELATED
Bpl_scaf_17475-0.4DEOXYCYTIDYLATE DEAMINASE-RELATED
Bpl_scaf_17489-0.0
Bpl_scaf_17489-0.2
Bpl_scaf_1750-0.10SCHLAFEN
Bpl_scaf_1750-0.6
Bpl_scaf_1750-1.1
Bpl_scaf_1750-1.6
Bpl_scaf_17502-0.0LD39211P
Bpl_scaf_17502-0.10
Bpl_scaf_17502-0.9
Bpl_scaf_17517-0.0
Bpl_scaf_17517-0.6PRE-MRNA SPLICING FACTOR PRP31
Bpl_scaf_17517-0.7
Bpl_scaf_17524-0.7METHYLTRANSF_11 DOMAIN-CONTAINING PROTEIN
Bpl_scaf_17532-0.0
Bpl_scaf_17532-0.1
Bpl_scaf_17532-0.4DNA HELICASE RECQ FAMILY MEMBER
Bpl_scaf_17533-0.11AXIN
Bpl_scaf_17533-0.12MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE
Bpl_scaf_17533-1.6ANKYRIN DOMAIN-CONTAINING
Bpl_scaf_17533-1.7ANKYRIN DOMAIN-CONTAINING
Bpl_scaf_17533-3.13ANKYRIN REPEAT-CONTAINING
Bpl_scaf_17533-3.20ZCCHC10 PROTEIN
Bpl_scaf_17533-3.21
Bpl_scaf_17533-4.1239S RIBOSOMAL PROTEIN L12
Bpl_scaf_17533-4.27CLUSTERIN ASSOCIATED PROTEIN 1
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