About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_17714-15.10THYMIDYLATE SYNTHASE 1
Bpl_scaf_17714-15.7NUCLEAR HORMONE RECEPTOR
Bpl_scaf_17714-16.1CEREBELLIN-RELATED
Bpl_scaf_17714-16.4CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE
Bpl_scaf_17714-17.8
Bpl_scaf_17714-2.13CHARGED MULTIVESICULAR BODY PROTEIN
Bpl_scaf_17714-2.3CEREBELLIN-RELATED
Bpl_scaf_17714-3.0
Bpl_scaf_17714-3.10TRANSMEMBRANE PROTEIN 64
Bpl_scaf_17714-4.13EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA
Bpl_scaf_17714-4.8
Bpl_scaf_17714-4.9ZINC FINGER PROTEIN ZIC AND GLI
Bpl_scaf_17714-5.3CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 IPLA2 -RELATED
Bpl_scaf_17714-6.12
Bpl_scaf_17714-6.33FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Bpl_scaf_17714-6.8SERINE/THREONINE-PROTEIN KINASE 17
Bpl_scaf_17714-7.11PHOSPHOGLYCERATE MUTASE-RELATED
Bpl_scaf_17714-7.13
Bpl_scaf_17714-7.7
Bpl_scaf_17714-8.2U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM10
Bpl_scaf_17714-8.5TUMOR NECROSIS FACTOR RECEPTOR
Bpl_scaf_17714-9.13
Bpl_scaf_17714-9.15
Bpl_scaf_17714-9.16
Bpl_scaf_17718-0.0
Bpl_scaf_17720-1.1
Bpl_scaf_17731-0.5
Bpl_scaf_17731-0.8
Bpl_scaf_17731-1.0
Bpl_scaf_17731-1.13E3 UBIQUITIN-PROTEIN LIGASE TRIM
Bpl_scaf_17731-1.2
Bpl_scaf_17731-1.20
Bpl_scaf_17731-1.22
Bpl_scaf_17731-1.26BONUS, ISOFORM C-RELATED
Bpl_scaf_17731-1.3BONUS, ISOFORM C-RELATED
Bpl_scaf_17731-1.38SERINE / THREONINE RACEMASE FAMILY MEMBER
Bpl_scaf_17731-1.41TRANSPOSABLE ELEMENT-RELATED
Bpl_scaf_17731-1.5BONUS, ISOFORM C-RELATED
Bpl_scaf_17731-1.52
Bpl_scaf_17731-1.53SERINE / THREONINE RACEMASE FAMILY MEMBER
Bpl_scaf_17731-1.56AGAP005574-PA
Bpl_scaf_17731-1.7
Bpl_scaf_17733-0.0SIMILAR TO RIKEN CDNA E130308A19
Bpl_scaf_17734-0.0
Bpl_scaf_17742-0.0
Bpl_scaf_17742-0.13THAP DOMAIN PROTEIN
Bpl_scaf_17742-1.10
Bpl_scaf_17742-1.2UNC-93 RELATED
Bpl_scaf_17742-1.7
Bpl_scaf_17742-1.9
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