The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides40362 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides40363 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| Paelopatides40364 | CYCLINS |
| Paelopatides40365 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| Paelopatides40366 | |
| Paelopatides40367 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| Paelopatides40368 | |
| Paelopatides40369 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| Paelopatides40370 | RNA BINDING PROTEIN PUMILIO-RELATED |
| Paelopatides40371 | |
| Paelopatides40372 | CERAMIDASE |
| Paelopatides40373 | |
| Paelopatides40374 | CERAMIDASE |
| Paelopatides40375 | PROTEIN VAV |
| Paelopatides40376 | PROTEIN VAV |
| Paelopatides40377 | |
| Paelopatides40378 | AMIDOHYDROLASE |
| Paelopatides40379 | EXPRESSED PROTEIN |
| Paelopatides40380 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides40381 | |
| Paelopatides40382 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides40383 | |
| Paelopatides40384 | AGAP008810-PA |
| Paelopatides40385 | CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR |
| Paelopatides40386 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides40387 | |
| Paelopatides40388 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides40389 | |
| Paelopatides40390 | M-PHASE INDUCER PHOSPHATASE DUAL SPECIFICITY PHOSPHATASE CDC25 |
| Paelopatides40391 | |
| Paelopatides40392 | HISTONE RNA HAIRPIN-BINDING PROTEIN |
| Paelopatides40393 | PALMITOYLTRANSFERASE ZDHHC16 |
| Paelopatides40394 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| Paelopatides40395 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| Paelopatides40396 | SEC15 |
| Paelopatides40397 | PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED |
| Paelopatides40398 | PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED |
| Paelopatides40399 | PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED |
| Paelopatides40400 | PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED |
| Paelopatides40402 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides40403 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G |
| Paelopatides40404 | |
| Paelopatides40409 | SI:CH211-196P9.1-RELATED |
| Paelopatides40412 | SRCR DOMAIN-CONTAINING PROTEIN |
| Paelopatides40413 | REVERSE TRANSCRIPTASES |
| Paelopatides40414 | |
| Paelopatides40416 | PROTEIN, PUTATIVE-RELATED |
| Paelopatides40417 | |
| Paelopatides40418 | |
| Paelopatides40419 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
