The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides40040 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Paelopatides40041 | RETROTRANSPOSON |
| Paelopatides40042 | RETROTRANSPOSON |
| Paelopatides40043 | RETROTRANSPOSON |
| Paelopatides40044 | TRANSPOSON |
| Paelopatides40045 | |
| Paelopatides40046 | |
| Paelopatides40047 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
| Paelopatides40048 | |
| Paelopatides40049 | |
| Paelopatides40050 | |
| Paelopatides40051 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides40052 | 14-3-3 PROTEIN |
| Paelopatides40053 | |
| Paelopatides40054 | BREAST CARCINOMA AMPLIFIED SEQUENCE 3 |
| Paelopatides40055 | PROTEIN CBG26694 |
| Paelopatides40056 | BREAST CARCINOMA AMPLIFIED SEQUENCE 3 |
| Paelopatides40057 | SYNAPTOSOMAL ASSOCIATED PROTEIN |
| Paelopatides40058 | CHROMOSOME 20 ORF85 FAMILY MEMBER |
| Paelopatides40059 | PHOSPHATIDYLINOSITOL TRANSFER PROTEIN |
| Paelopatides40060 | - |
| Paelopatides40061 | |
| Paelopatides40062 | |
| Paelopatides40063 | |
| Paelopatides40064 | PA-PL1 PHOSPHOLIPASE FAMILY |
| Paelopatides40065 | RH59310P |
| Paelopatides40066 | |
| Paelopatides40067 | TOLL-LIKE RECEPTOR |
| Paelopatides40068 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8 |
| Paelopatides40076 | RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1 |
| Paelopatides40077 | CYTOCHROME P450 508A4-RELATED |
| Paelopatides40078 | CYTOCHROME P450 508A4-RELATED |
| Paelopatides40079 | CYTOCHROME P450 508A4-RELATED |
| Paelopatides40080 | OPSIN |
| Paelopatides40081 | |
| Paelopatides40082 | SI:CH211-196P9.1-RELATED |
| Paelopatides40083 | ENZYMATIC POLYPROTEIN-RELATED |
| Paelopatides40084 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides40085 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides40086 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Paelopatides40087 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29 |
| Paelopatides40088 | |
| Paelopatides40089 | MRNA GUANINE-7- METHYLTRANSFERASE |
| Paelopatides40090 | RIBOSOMAL RNA METHYLTRANSFERASE |
| Paelopatides40091 | |
| Paelopatides40092 | |
| Paelopatides40093 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides40094 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides40095 | TIRAP |
| Paelopatides40096 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
