The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides40208 | HOMEOBOX PROTEIN |
| Paelopatides40209 | HOMEOBOX PROTEIN |
| Paelopatides40210 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Paelopatides40211 | HOMEOBOX PROTEIN |
| Paelopatides40212 | MUTATED IN BLADDER CANCER 1 |
| Paelopatides40213 | DUAL SPECIFICITY PROTEIN PHOSPHATASE 19 |
| Paelopatides40214 | PHD FINGER PROTEINS |
| Paelopatides40215 | MUTATED IN BLADDER CANCER 1 |
| Paelopatides40216 | DUAL SPECIFICITY PROTEIN PHOSPHATASE 19 |
| Paelopatides40217 | 2-HYDROXYACYL-COA LYASE |
| Paelopatides40218 | PROTEIN CBG26694 |
| Paelopatides40219 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides40220 | |
| Paelopatides40221 | 2-HYDROXYACYL-COA LYASE |
| Paelopatides40222 | |
| Paelopatides40223 | |
| Paelopatides40224 | |
| Paelopatides40225 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Paelopatides40226 | AP ENDONUCLEASE |
| Paelopatides40227 | |
| Paelopatides40228 | SEPIAPTERIN REDUCTASE |
| Paelopatides40229 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides40230 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides40231 | |
| Paelopatides40232 | TYROSINE-PROTEIN KINASE |
| Paelopatides40233 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
| Paelopatides40234 | CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED |
| Paelopatides40235 | |
| Paelopatides40236 | LEUCINE RICH REPEAT FAMILY PROTEIN |
| Paelopatides40237 | IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS |
| Paelopatides40238 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
| Paelopatides40239 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
| Paelopatides40240 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
| Paelopatides40241 | NETRIN/LAMININ-RELATED |
| Paelopatides40242 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Paelopatides40243 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Paelopatides40247 | TETRATRICOPEPTIDE REPEAT PROTEIN 16 |
| Paelopatides40248 | |
| Paelopatides40249 | PARAOXONASE |
| Paelopatides40250 | |
| Paelopatides40251 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides40252 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides40253 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides40254 | ENDONUCLEASE-RELATED |
| Paelopatides40255 | |
| Paelopatides40256 | BEN DOMAIN-CONTAINING PROTEIN 6 |
| Paelopatides40257 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
| Paelopatides40258 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides40259 | CYSTATIN FAMILY MEMBER |
| Paelopatides40260 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
