About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633 Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40%57,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides40312VACUOLAR PROTEIN SORTING VPS16
Paelopatides40313VACUOLAR PROTEIN SORTING VPS16
Paelopatides40314VACUOLAR PROTEIN SORTING VPS16
Paelopatides40315REVERSE TRANSCRIPTASES
Paelopatides40316
Paelopatides40317TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
Paelopatides40318VACUOLAR ATP SYNTHASE SUBUNIT F
Paelopatides40319NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides4032026S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3
Paelopatides40321LASP
Paelopatides40322
Paelopatides40323LASP
Paelopatides40324TRANSCRIPTION FACTOR CP2
Paelopatides40325REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides40326TRANSCRIPTION FACTOR CP2
Paelopatides40327
Paelopatides40328
Paelopatides40329PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides40330PHOSPHOFURIN ACIDIC CLUSTER SORTING PROTEIN
Paelopatides40331HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
Paelopatides40332
Paelopatides40333RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides40334HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
Paelopatides40335BTB POZ DOMAIN CONTAINING 7
Paelopatides40336
Paelopatides40337PROTEIN CBG26694
Paelopatides40338
Paelopatides40339POL PROTEIN
Paelopatides40340PARANEOPLASTIC ANTIGEN
Paelopatides40341-
Paelopatides40342UBIQUITINATION FACTOR E4
Paelopatides40343COILED-COIL DOMAIN-CONTAINING PROTEIN 30
Paelopatides40344ZINC FINGER PROTEIN
Paelopatides40345NEFA-INTERACTING NUCLEAR PROTEIN NIP30
Paelopatides40346ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides40347ZINC FINGER PROTEIN
Paelopatides40348ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides40349HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides40350CARBOHYDRATE SULFOTRANSFERASE 15
Paelopatides40351CARBOHYDRATE SULFOTRANSFERASE 15
Paelopatides40352CARBOHYDRATE SULFOTRANSFERASE 15
Paelopatides40353PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides40354
Paelopatides40355STROMAL INTERACTION MOLECULE HOMOLOG
Paelopatides40356PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides40357
Paelopatides40358
Paelopatides40359PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides40360
Paelopatides40361
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