The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides40261 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides40262 | |
| Paelopatides40263 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides40264 | ENDONUCLEASE-RELATED |
| Paelopatides40265 | PHOSPHOGLYCERATE KINASE |
| Paelopatides40266 | PHOSPHOGLYCERATE KINASE |
| Paelopatides40267 | POL PROTEIN |
| Paelopatides40269 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides40270 | |
| Paelopatides40271 | |
| Paelopatides40272 | TRANSPOSASE, PUTATIVE-RELATED |
| Paelopatides40273 | - |
| Paelopatides40274 | |
| Paelopatides40275 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides40276 | |
| Paelopatides40277 | |
| Paelopatides40278 | ZGC:195170 |
| Paelopatides40279 | |
| Paelopatides40280 | |
| Paelopatides40281 | SERINE-THREONINE PROTEIN KINASE |
| Paelopatides40282 | PROTEIN CBG26694 |
| Paelopatides40283 | |
| Paelopatides40284 | |
| Paelopatides40285 | TESMIN/TSO1-RELATED |
| Paelopatides40286 | |
| Paelopatides40287 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides40288 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 |
| Paelopatides40289 | |
| Paelopatides40290 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides40291 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides40292 | GLUTAMATE DEHYDROGENASE |
| Paelopatides40293 | GLUTAMATE DEHYDROGENASE |
| Paelopatides40294 | |
| Paelopatides40295 | |
| Paelopatides40296 | ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN |
| Paelopatides40297 | |
| Paelopatides40298 | LORICRIN |
| Paelopatides40299 | 3-KETO-STEROID REDUCTASE |
| Paelopatides40300 | SRCR DOMAIN-CONTAINING PROTEIN |
| Paelopatides40301 | |
| Paelopatides40302 | |
| Paelopatides40303 | TRANSMEMBRANE PROTEIN 169 |
| Paelopatides40304 | CHITINASE DOMAIN-CONTAINING PROTEIN 1 FAMILY MEMBER |
| Paelopatides40305 | PROTEIN CBG26694 |
| Paelopatides40306 | ADAPTIN, ALPHA/GAMMA/EPSILON |
| Paelopatides40307 | DELTA-RELATED |
| Paelopatides40308 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides40309 | SCAVENGER RECEPTOR CLASS F |
| Paelopatides40310 | DRAB11-RELATED |
| Paelopatides40311 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
