About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides01474-
Paelopatides01475-
Paelopatides01476-
Paelopatides01477PHOSPHOSERINE AMINOTRANSFERASE
Paelopatides01478GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE MESH1
Paelopatides01479-
Paelopatides01480CORONIN
Paelopatides01481ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32
Paelopatides01482SUPPRESSION OF TUMORIGENICITY 7
Paelopatides01483REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides01484ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides01486REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides01487-
Paelopatides01488-
Paelopatides01489LYSOPHOSPHOLIPASE-RELATED
Paelopatides01490PROTEIN CBG26694
Paelopatides01491PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides01492SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides01493PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides01494-
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