About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides01353-
Paelopatides01354NADH-UBIQUINONE OXIDOREDUCTASE ASHI SUBUNIT
Paelopatides01355CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides01356CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides01357ENDONUCLEASE-RELATED
Paelopatides01358-
Paelopatides01359TYROSINE-PROTEIN KINASE
Paelopatides01360-
Paelopatides01361REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides01362-
Paelopatides01363FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides01364-
Paelopatides01365LEUCOKININ RECEPTOR-RELATED
Paelopatides01366UPF0449 PROTEIN C19ORF25
Paelopatides01367UBIQUILIN
Paelopatides01368FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE
Paelopatides01369PROTEIN DISULFIDE ISOMERASE
Paelopatides0137060S RIBOSOMAL PROTEIN L24
Paelopatides01371ENDONUCLEASE-RELATED
Paelopatides01372CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
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