About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides01312-
Paelopatides01313-
Paelopatides01315-
Paelopatides01316GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides01317REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides01318COLON CANCER-ASSOCIATED PROTEIN MIC1
Paelopatides01319COLON CANCER-ASSOCIATED PROTEIN MIC1
Paelopatides01320ANNEXIN
Paelopatides01321ANNEXIN
Paelopatides01322ANNEXIN
Paelopatides01323UROCANATE HYDRATASE
Paelopatides01324BUCENTAUR RELATED
Paelopatides01325-
Paelopatides01326ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides01327CYCLINS
Paelopatides01328-
Paelopatides01329UNCHARACTERIZED
Paelopatides01330ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides01331ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL
Paelopatides01332ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL
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