About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides01245HMG DOMAIN-CONTAINING PROTEIN 3
Paelopatides01246-
Paelopatides01247REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides01249FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides01250PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides01251RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED
Paelopatides01252VITELLOGENIN-RELATED
Paelopatides01253AP ENDONUCLEASE
Paelopatides01254SLR5058 PROTEIN
Paelopatides01255PHOSPHOLIPASE B, PLB1
Paelopatides01256PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides01257ZINC FINGER PROTEIN
Paelopatides01258-
Paelopatides01259-
Paelopatides01260-
Paelopatides01261-
Paelopatides01262ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
Paelopatides01263-
Paelopatides01264FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides01265GLUTATHIONE S-TRANSFERASE
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