About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides01118CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides01119CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides01120HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides01121HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides01122HEME-BINDING PROTEIN-RELATED
Paelopatides01123AROMATIC AMINO ACID HYDROXYLASE
Paelopatides01124TARSH-RELATED FIBRONECTIN DOMAIN-CONTAINING
Paelopatides01125ACROSIN-RELATED
Paelopatides01126-
Paelopatides01127UNCHARACTERIZED
Paelopatides01128PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides01129UNCHARACTERIZED
Paelopatides01130NETRIN RECEPTOR UNC5
Paelopatides01131NXPE FAMILY MEMBER
Paelopatides01132-
Paelopatides01133PDF RECEPTOR-LIKE PROTEIN-RELATED
Paelopatides01134PDF RECEPTOR-LIKE PROTEIN-RELATED
Paelopatides01135CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides01136REVERSE TRANSCRIPTASES
Paelopatides01137MATRIX METALLOPROTEINASE
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