About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides01073FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides01074ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides01075-
Paelopatides01076CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides01077TRANSPOSON
Paelopatides01078HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides01084-
Paelopatides01085-
Paelopatides01086-
Paelopatides01087REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides01088-
Paelopatides01089PROTEIN CBG26694
Paelopatides01090ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides01091RETROTRANSPOSON
Paelopatides01092RETROTRANSPOSON
Paelopatides01093CYTOCHROME P450 508A4-RELATED
Paelopatides01094REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides01095REVERSE TRANSCRIPTASES
Paelopatides01096-
Paelopatides01097COUNTIN RECEPTOR CNR3-RELATED
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