About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides01032TRANSPOSON
Paelopatides01033TRANSPOSON
Paelopatides01034REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides01035NETRIN RECEPTOR UNC5
Paelopatides01036-
Paelopatides01037DYNEIN HEAVY CHAIN
Paelopatides01038-
Paelopatides01039IMMUNOGLOBULIN
Paelopatides01040NETRIN RECEPTOR UNC5
Paelopatides01041DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides01042PROTEIN CBG26694
Paelopatides01043REVERSE TRANSCRIPTASES
Paelopatides01044-
Paelopatides01046G DOMAIN-CONTAINING PROTEIN
Paelopatides01047-
Paelopatides01048PROTEIN CBG26694
Paelopatides01049PROTEIN CBG26694
Paelopatides01050-
Paelopatides01051SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides01052BUCENTAUR RELATED
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