About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides00929MALONYL-COA ACP TRANSACYLASE, ACP-BINDING
Paelopatides00930PROTEIN CBG26694
Paelopatides00931SNARE PROTEINS
Paelopatides00932ALPHA-MANNOSIDASE
Paelopatides00933ALPHA-MANNOSIDASE
Paelopatides00934PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides00935-
Paelopatides00936PROTEIN CBG26694
Paelopatides00937DYNAMIN
Paelopatides00938-
Paelopatides00939SPINAL CORD EXPRESSION PROTEIN 4
Paelopatides00940ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides00941PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides00942-
Paelopatides00943CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides00944CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides00945PRENYLATED RAB ACCEPTOR 1-RELATED
Paelopatides00946GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides00947-
Paelopatides00948ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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