About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides00845STEERIN
Paelopatides00846-
Paelopatides00847SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
Paelopatides00850TRANSPOSON
Paelopatides00851REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides00852ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides00853-
Paelopatides00854-
Paelopatides00855PROTEIN CBG26694
Paelopatides00856PROTEIN CBG26694
Paelopatides00857NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides00858ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides00859-
Paelopatides00860GEO07735P1-RELATED-RELATED
Paelopatides00861LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Paelopatides00862EPM2A-INTERACTING PROTEIN 1
Paelopatides00863RETROTRANSPOSON
Paelopatides00864-
Paelopatides00865REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides00866PEROXISOMAL MEMBRANE PROTEIN PMP34-RELATED
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