About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides00991SI:CH211-183D21.1
Paelopatides00992SI:CH211-183D21.1
Paelopatides00993ADP RIBOSYLATION FACTOR-RELATED
Paelopatides00994KELCH DOMAIN-CONTAINING PROTEIN
Paelopatides00995-
Paelopatides00996RETROTRANSPOSON
Paelopatides00997-
Paelopatides00998QUEUINE TRNA-RIBOSYLTRANSFERASE ACCESSORY SUBUNIT 2
Paelopatides00999-
Paelopatides01000-
Paelopatides01001ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides01002ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides01003REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides01004TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
Paelopatides01005REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides01006RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides01008HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN
Paelopatides01009KU AUTOANTIGEN DNA HELICASE
Paelopatides01010-
Paelopatides01011TIM23
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